Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq1633 84.2 6e-12 >seq1633 Length=412253 Score = 84.2 bits (92), Expect = 6e-12 Identities = 252/384 (66%), Gaps = 10/384 (3%) Strand=Plus/Plus Query 22054 GAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACT 22113 |||| || || |||||| ||||| || | ||| || | || | ||||||||||||| Sbjct 238148 GAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCACT 238207 Query 22114 CTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGAC 22173 || ||||||||| | ||||||| | || || | || | || | | | |||| Sbjct 238208 TACGGCCCATGTAACAAGCTACGCCAAGTAACAAATGTAGAACAATTAGCTCGTAAGGAC 238267 Query 22174 CGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTC 22233 ||| ||||| | ||||||| ||| | || ||||| || | ||||| ||| | | | Sbjct 238268 TGCCATTGTATAACCATTCAGCAACGGACGCCGCTTCTCATCTCGGGTAAAAGCGCAAAC 238327 Query 22234 CGATGGCATTACTG--CTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAG 22291 | || || ||| | | |||| | ||| || || || || |||| ||||| || || Sbjct 238328 CTATAGC--TACAGAAGTAGGAATAATGGCACCAGAAATAATACTGTTTCCATAAAATAG 238385 Query 22292 GGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGC 22351 || | | || ||||| || || || || || || | | || | ||| | | Sbjct 238386 AGACCTGGAAACAGGTTCACGAATACCGTCAATATCTATTGAAGGAGTAGCAATGACAAC 238445 Query 22352 GATAATAAA---ACAAGTTGTAGCGGCAAGGAGGCACGGAATCATAAGGACTCCGAACCA 22408 ||||||||| | |||||| | | ||| | | | || ||||| | || || ||||| Sbjct 238446 GATAATAAATACAGAAGTTGCA--GTCAATAAAGTA-GGGATCATCAAAACACCAAACCA 238502 Query 22409 TCCTACATAAAGACGGTTATTAGT 22432 | | | |||||| |||| | ||| Sbjct 238503 TTCGATGTAAAGATGGTTTTCAGT 238526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146179687460460