Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq2265 298 6e-76 seq1633 109 6e-19 seq11 105 8e-18 >seq2265 Length=185284 Score = 298 bits (330), Expect = 6e-76 Identities = 554/812 (68%), Gaps = 22/812 (3%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | || | || || || ||||||| || || ||||| || || Sbjct 95067 TTAAAGAGCGTTTCCACGGGGCAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTG 95008 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| | | || ||||| || | ||||| || || || ||||| Sbjct 95007 ATCTTGAGTCGCCATCCAAGGACGAATACCTTCGTTTAATAGAATATTTTTGGTGTAGAA 94948 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || |||| ||||| | || || ||||| || ||||| || || | Sbjct 94947 AGTCTCAAATTCGGGATCTTTCGCTGCACGAATTTCCTGAGAAACGAAGTCATAGGCACG 94888 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 ||||| || || ||||| || | || | || |||| | ||| | || || || Sbjct 94887 TAGGTTCAGAGCCAGACCGACTACTCCGAGAGCGCTCATCCATAAACCGGTTACTGGTAC 94828 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || ||||||| ||| ||||| | | ||| || ||||| || || |||||||| || || Sbjct 94827 AAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAATCCCAAATATTTGGGA 94768 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | ||| || || | ||| ||||||||||| | || || || | || || Sbjct 94767 CCAAAAGCGGTTAGCAGTGACCATTGAATAAGTTTCTTTAGCTTGAGTTGGGTTAAAAGC 94708 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 ||| |||| ||| | || ||| || ||||| | || || Sbjct 94707 ATAGAA---TGTAT-TTGCA-----CCATCACCAT------------CTTCAAATAAAGT 94669 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 || | ||| || ||||||||||| || ||||| | || | || | || || |||| Sbjct 94668 ATTTTCCACAGTAGCACCATGAATAGCGCATAGAAGAGCAGCGCCCAATACACCGTCAAC 94609 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 ||||| || ||||||||||||||||| || || || ||||| | || | ||| | Sbjct 94608 TCCCATTATATGAAATGGATTCAATGTCCAATTATGAAACCCTTGGAAAAAGAGGATGAA 94549 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||||| || ||||| ||||| || || || |||||||||| |||||| ||||| Sbjct 94548 TCGAAATATAGCTGCTACACCAAAACTAGGCGCAAAGAACCAACCAGACTGACCCAGTGG 94489 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| ||||| || | | || ||||| || | ||||||||| || ||| || || Sbjct 94488 ATAAATCAGGAATACAGAAACAAAAACTGCAATTGGAACAGAGAATGTGATTGCATTATA 94429 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585 ||||| ||| |||| || || | |||||||| | |||||||||||||| ||||| Sbjct 94428 AGGTCGAAT-TGAACAAATCGAGCAAGTTCAAATTGACGTAGCATGAAACCTATTAGTCC 94370 Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645 || || |||| || ||||| |||| ||||| || | ||| |||||||| || Sbjct 94369 GAAAGTGCCGTGTAGAGCAACAAAAGTCCACAGACCACCTAATTGACACCAACGAGTAAA 94310 Query 123646 TGATCCTTGTGCTTCAGGTCCCCAAAGGAACA 123677 ||||||||||||||| ||||| || |||| Sbjct 94309 ATCTCCTTGTGCTTCAGGACCCCATAGTAACA 94278 >seq1633 Length=412253 Score = 109 bits (120), Expect = 6e-19 Identities = 243/359 (68%), Gaps = 12/359 (3%) Strand=Plus/Plus Query 124634 GCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGT 124693 |||||||| |||||| |||||||| ||||| || || | | | |||||||||| Sbjct 238150 GCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCACTTA 238209 Query 124694 CTTCCCATGTATGCTGAAATACCAA-TAAGGAA-GTGGAA-AATTACCAACTGATAAGGA 124750 | |||||||| | | |||| ||| || || ||| ||||| | | |||||| Sbjct 238210 CGGCCCATGTAACAAGCTACGCCAAGTAACAAATGTAGAACAATTAGC---TCGTAAGGA 238266 Query 124751 CCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGT 124810 | ||||| || ||||||||| |||| | || ||||| || | ||||| ||| | | Sbjct 238267 CTGCCATTGTATAACCATTCAGCAACGGACGCCGCTTCTCATCTCGGGTAAAAGCGCAAA 238326 Query 124811 CCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAA 124870 || ||||| || | |||| || |||||||| || || |||| ||||| || | | Sbjct 238327 CCTATAGCTACAGAAGTAGGAATAATGGCACCAGAAATAATACTGTTTCCATAAAATAGA 238386 Query 124871 GAACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCA 124930 || | | || ||||| | || ||||| ||||| | | ||| | ||||| | || Sbjct 238387 GACCTGGAAACAGGTTCACGAATACCGTCAATATCTATTGAAGGAGTAGCAATGA---CA 238443 Query 124931 ACGATGAAACATGCTGC---TGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCA 124986 ||||| | | || | | ||| || | ||| || ||||| | |||||||||||| Sbjct 238444 ACGATAATAAATACAGAAGTTGCAGTCAATAAAGTAGGGATCATCAAAACACCAAACCA 238502 >seq11 Length=1586642 Score = 105 bits (116), Expect = 8e-18 Identities = 151/209 (72%), Gaps = 8/209 (4%) Strand=Plus/Plus Query 139315 CTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTT 139374 |||| || ||||| || || ||||| || ||||| |||| ||||||||||| ||||||| Sbjct 396346 CTTGAGCAGTGCAAATATTGCTGGTAGCCTTGTCCCTTCGGATATGCTGCTCCCTAGTTT 396405 Query 139375 GTAGTGCTAATCTGTATGCAGGATTGCCTTCGCTG--TC--CACTGACTGACCTACAATT 139430 | | || | || ||||| || || || | || |||| || ||| | ||| Sbjct 396406 GCATCGCCATTCGCAGAGCAGGCTTCCC--CGAAGAATCAACACTAAC--ACCAATAATC 396461 Query 139431 CTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCT 139490 || ||||| ||| | ||||| |||| | || || || ||||| || |||||||||||| Sbjct 396462 CTTCCAGGCATCATCCTCTTGTACTCTTGTGAGGTGGCCAAGAAAGCCGCATGAGGACCT 396521 Query 139491 CCGTATCCCATAGGAATACCAAACCTTTG 139519 || || |||||||| | || ||||| || Sbjct 396522 CCATAACCCATAGGCACCCCGAACCTCTG 396550 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||||||||| || || |||||| | ||||| | | || || || | ||||| || || Sbjct 396887 CATTGCCTCAGCCGCAGCAGTTCCCTCATCAAGCAATGAAGCATTCGACATTGGCAAACC 396946 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 || || || || || | ||||||||||||| |||| || | ||| || |||||||| Sbjct 396947 AGTGAGATCAGTAATCATTGTTTGGTAATTGAGCAAAGACTCAAGTCTCCCTTGAGATAT 397006 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTC 140023 ||| || ||||| || || || || |||||| |||||||| Sbjct 397007 CTCGGCCTGATAAGGGGTATATTGCGTATACCAAGCCGGATTCTC 397051 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 138288 AGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGA 138347 || || ||||||||||| | || || ||||| | ||||| ||||| |||||||||||| Sbjct 394390 AGCCCGACCTGTGCATTCATGTTAGCCCCATCCATGTATACTTGACCTCCATTGTCATGA 394449 Query 138348 ACGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTA 138407 | ||| ||||||||| || | |||| | || |||||||| |||||||||||| Sbjct 394450 ATTATCCTACATATCTCATCAATACCTTCTTCATAAACTCCATGAGTTGATGGATATGTA 394509 Query 138408 A 138408 | Sbjct 394510 A 394510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578880378413640