Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq2265 401 8e-107 seq1633 140 4e-28 seq734 86.0 8e-12 >seq2265 Length=185284 Score = 401 bits (444), Expect = 8e-107 Identities = 571/802 (71%), Gaps = 1/802 (0%) Strand=Plus/Minus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCAATTACAGGAAAGTTTTCGTGTGGTT 23445 || ||||||| || || | || || | |||||| | || |||||| || || | Sbjct 95068 ATTAAAGAGCGTTTCCACGGGGCAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 95009 Query 23446 GGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGTAGA 23505 | || |||| |||||| ||| | || | ||| || | ||||||||| ||||||| Sbjct 95008 GATCTTGAGTCGCCATCCAAGGACGAATACCTTCGTTTAATAGAATATTTTTGGTGTAGA 94949 Query 23506 AGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAGCAC 23565 | |||||| | ||||| || |||||||| || ||| || || ||||| |||| Sbjct 94948 AAGTCTCAAATTCGGGATCTTTCGCTGCACGAATTTCCTGAGAAACGAAGTCATAGGCAC 94889 Query 23566 GAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAGGAA 23625 | || || ||||| || || | | || | || | ||| | ||| | || || | Sbjct 94888 GTAGGTTCAGAGCCAGACCGACTACTCCGAGAGCGCTCATCCATAAACCGGTTACTGGTA 94829 Query 23626 CAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTG 23685 |||| ||||||||||| || |||||||| |||||| ||| |||| ||| || ||||| | Sbjct 94828 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAATCCCAAATATTTGGG 94769 Query 23686 ACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACG 23745 ||||||| || || || || ||||| ||||| || || | | ||||| | | || | Sbjct 94768 ACCAAAAGCGGTTAGCAGTGACCATTGAATAAGTTTCTTTAGCTTGAGTTGGGTTAAAAG 94709 Query 23746 CTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCAT 23805 | | || || ||||| || ||||||||| | | ||||| || |||||| | |||| Sbjct 94708 CATAGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCCACAGTAGCACCAT 94649 Query 23806 GAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGT 23865 ||||||| | ||||| || | |||| || ||| |||||||||| ||||| || || | Sbjct 94648 GAATAGCGCATAGAAGAGCAGCGCCCAATACACCGTCAACTCCCATTATATGAAATGGAT 94589 Query 23866 TGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACAC 23925 | | ||||| |||||||| || |||| ||||| | ||| | || || || || |||| Sbjct 94588 TCAATGTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCTGCTACAC 94529 Query 23926 CGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACA 23985 | ||||| ||||||||||||||| ||||| |||| ||||| || ||||||||||| | Sbjct 94528 CAAAACTAGGCGCAAAGAACCAACCAGACTGACCCAGTGGATAAATCAGGAATACAGAAA 94469 Query 23986 CGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGAC 24045 | || || ||||| ||| |||| || | || ||||| || || || ||| || | | Sbjct 94468 CAAAAACTGCAATTGGAACAGAGAATGTGATTGCATTATAAGGTCGAATT-GAACAAATC 94410 Query 24046 GTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCAA 24105 | || |||||||| ||||||| ||| |||||||| ||| | || | ||||| ||||||| Sbjct 94409 GAGCAAGTTCAAATTGACGTAGCATGAAACCTATTAGTCCGAAAGTGCCGTGTAGAGCAA 94350 Query 24106 CAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGAC 24165 |||| | ||| || || || | ||| ||| || ||| || ||||| | ||||||| Sbjct 94349 CAAAAGTCCACAGACCACCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGAC 94290 Query 24166 CCCAAAGTAGAAGAAGAGAATG 24187 |||| |||| | | |||||| Sbjct 94289 CCCATAGTAACAACAAAGAATG 94268 >seq1633 Length=412253 Score = 140 bits (154), Expect = 4e-28 Identities = 246/356 (69%), Gaps = 2/356 (1%) Strand=Plus/Plus Query 27317 GAGCAGAATATGCTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACT 27376 |||| |||||||| ||| ||||| || |||||||| ||||| | |||||||||| Sbjct 238148 GAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCACT 238207 Query 27377 CACGTCCCATATAAGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGAC 27436 ||| ||||| ||| | | ||| | | || || | || | || | | |||||| Sbjct 238208 TACGGCCCATGTAACAAGCTACGCCAAGTAACAAATGTAGAACAATTAGCTCGTAAGGAC 238267 Query 27437 CACCGTTATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGAC 27496 || || || ||||| ||| | | || || ||||| || | ||||| ||| | | || Sbjct 238268 TGCCATTGTATAACCATTCAGCAACGGACGCCGCTTCTCATCTCGGGTAAAAGCGCAAAC 238327 Query 27497 CGATTGCATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTG 27556 | || || ||| | || | || ||||||||||| || |||| ||||| | || | Sbjct 238328 CTATAGCTACAGAAGTAGGAATAATGGCACCAGAAATAATACTGTTTCCATAAAATAGAG 238387 Query 27557 AACCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGA 27616 | | | ||| ||||||||||||||||||||||| | | || | || |||| ||| Sbjct 238388 ACCTGGAAACAGGTTCACGAATACCGTCAATATCTATTGAAGGAGTAGCAATGACAACGA 238447 Query 27617 CAATGAA-GCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCA 27671 ||| || |||| |||||| | || | || |||||||||| ||||| ||||| Sbjct 238448 TAATAAATACAGA-AGTTGCAGTCAATAAAGTAGGGATCATCAAAACACCAAACCA 238502 >seq734 Length=848177 Score = 86.0 bits (94), Expect = 8e-12 Identities = 73/89 (82%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 23614 CCAT-GACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACC 23672 |||| ||| || ||||| ||||||||||| || |||||||| |||||| ||| |||||| Sbjct 325337 CCATAGACCGGTACAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACC 325278 Query 23673 CCGAAGATTTGTGACCAAAAACGATTTGC 23701 || ||| |||| ||||||| ||||| || Sbjct 325277 CCAAAGTTTTGGAACCAAAAGCGATTAGC 325249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665358747285240