Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3231 114 2e-20 seq339 109 7e-19 >seq3231 Length=135437 Score = 114 bits (126), Expect = 2e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAAC 75185 ||||||| ||| | || ||||||||| ||||||||||||||| | ||| |||| || Sbjct 18534 CGGGACTTTGACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCCTACCTCTTGAAG 18475 Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245 | || | || | | | || | || || | ||||| ||| |||| | | || | Sbjct 18474 G--TCCAAGGGAAGGTTGTAGAGAGACCTCAACATATGTTAATGAGGGTTTCTGTTGGAA 18417 Query 75246 TCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 75305 ||||| ||| || ||||| ||||| | | |||||| | | |||||| ||| | || Sbjct 18416 TCCACAAGGATGATATTGACTCTGTTATCAAAACATACCATATGATGTCTCAACGGTGGT 18357 Query 75306 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 ||| ||| || |||| ||||| ||||||||||| ||||||||||| || Sbjct 18356 TCACTCATGCTTCACCTACCCTTTTCAATGCTGGAACACCAAGACCTCA 18308 >seq339 Length=880584 Score = 109 bits (120), Expect = 7e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 ||||||||||| | | | || ||||| || ||||| || ||||||||||||||| | Sbjct 293295 CCTTCGCCGAGAGGATCGTCGCCTTTGCTTGCGTGGAAGGGATCTTCTTCTCCGGGAGCT 293236 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 ||||| | || | |||| ||||||||||||||||||||||||| || |||||| || | Sbjct 293235 TCTGCTCCATATTTTGGCTGAAGAAGCGGGGTCTCATGCCAGGACTCACCTTCTCCAACG 293176 Query 65189 AACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 | | | || || || || ||| | ||| || ||||| Sbjct 293175 AGTTGGTGTCACGTGACGAAGGTTTGCACTGCGATTTTGC 293136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596447996744160