Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq2265 434 1e-116 seq3416 82.4 9e-11 >seq2265 Length=185284 Score = 434 bits (480), Expect = 1e-116 Identities = 603/842 (72%), Gaps = 11/842 (1%) Strand=Plus/Plus Query 167194 ACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATGGGGT 167253 || || |||||| |||||| | || | | | |||||||| | | ||||||||| Sbjct 94232 ACCGCCGCAGTTTCTACTCCTACTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGT 94291 Query 167254 CCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTTTGTG 167313 |||||| | ||||| ||||| | ||| ||| | || || || ||| ||||||| Sbjct 94292 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 94351 Query 167314 GCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGC 167373 || || ||||| | || | || || ||||||||||| || || |||||||||||||| Sbjct 94352 GCTCTACACGGCACTTTCGGACTAATAGGTTTCATGCTACGTCAATTTGAACTTGCTCG- 94410 Query 167374 CTGATTGGT---ATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTC 167430 ||| || || || || || ||||| || | ||||||| ||| ||||| || || Sbjct 94411 ---ATTTGTTCAATTCGACCTTATAATGCAATCACATTCTCTGTTCCAATTGCAGTTTTT 94467 Query 167431 GTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTC 167490 ||| || ||||| | ||||| || ||||| | ||||||||||| || || Sbjct 94468 GTTTCTGTATTCCTGATTTATCCACTGGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTT 94527 Query 167491 GGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTG 167550 || || || || || || |||||| ||||||| ||||||| || || || |||||| || Sbjct 94528 GGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTG 94587 Query 167551 AATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATC 167610 |||||||||||||| ||||| || | ||| | |||| | ||| | || | || || Sbjct 94588 AATCCATTTCATATAATGGGAGTTGACGGTGTATTGGGCGCTGCTCTTCTATGCGCTATT 94647 Query 167611 CATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAAG 167670 ||||||| ||| || || |||||||| | |||||||||||| ||||| || || | Sbjct 94648 CATGGTGCTACTGTGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCTAT 94707 Query 167671 GCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGG 167730 || || | | ||||| | |||| |||||||||||||| || || ||||| || ||| Sbjct 94708 GCTTTTAACCCAACTCAAGCTAAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGG 94767 Query 167731 TCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTC 167790 || || || || || |||||||| ||| ||||| ||| | ||||||||||||||||| Sbjct 94768 TCCCAAATATTTGGGATTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 94827 Query 167791 GTTCCCGTTATGGGACTTTGGACATCATCG--ATTGGCATCATTGGTCTGGCTCTTAATC 167848 || || || | || | ||| || | || | || | | ||||||||||| || | Sbjct 94828 GTACCAGTAACCGGTTTATGG--ATGAGCGCTCTCGGAGTAGTCGGTCTGGCTCTGAACC 94885 Query 167849 TTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAA 167908 | ||||| || || ||||||||||| || || | || ||| | ||||| || ||||| | Sbjct 94886 TACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGCAGCGAAAGATCCCGAATTTGAGA 94945 Query 167909 CTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCG 167968 ||||||| || ||||| || || | || |||||| |||| | ||| | || || | Sbjct 94946 CTTTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGTCCTTGGATGGCGACTCAAG 95005 Query 167969 ATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACTAT 168028 |||| |||||||| ||| || | ||||| ||||| ||||| || || || ||||| || | Sbjct 95006 ATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTGCCCCGTGGAAACGCTCTTT 95065 Query 168029 AA 168030 || Sbjct 95066 AA 95067 >seq3416 Length=231096 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178 ||||| | |||||||||||||||| || ||||| ||| ||||||| || |||||| | Sbjct 40563 CTCCCATTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCG-A 40505 Query 18179 GGTTCAAATCCTACCTGGGGAG 18200 ||||| |||||||| ||||||| Sbjct 40504 GGTTCGAATCCTACTTGGGGAG 40483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561133596610800