Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq1633 84.2 6e-12 >seq1633 Length=412253 Score = 84.2 bits (92), Expect = 6e-12 Identities = 252/384 (66%), Gaps = 10/384 (3%) Strand=Plus/Minus Query 41255 ACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGCC 41314 ||| | |||| |||||| | | |||||| || || | ||||| || | | | ||| | Sbjct 238526 ACTGAAAACCATCTTTACATCGAATGGTTTGGTGTTTTGATGATCCC-TACTTTATTGAC 238468 Query 41315 GCTACAACTTGT---TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGA 41371 | |||||| | |||||||||| | ||| | || | | || || || || Sbjct 238467 --TGCAACTTCTGTATTTATTATCGTTGTCATTGCTACTCCTTCAATAGATATTGACGGT 238410 Query 41372 ATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTC 41431 || || ||||| || | | || || || ||||| |||| || || || || ||| | Sbjct 238409 ATTCGTGAACCTGTTTCCAGGTCTCTATTTTATGGAAACAGTATTATTTCTGGTGCCATT 238350 Query 41432 GTTCCGAG--CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACAC 41489 |||| | | ||| || || || | | ||| ||||| | || ||||| || | Sbjct 238349 ATTCCTACTTCTGTA--GCTATAGGTTTGCGCTTTTACCCGAGATGAGAAGCGGCGTCCG 238292 Query 41490 TTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTG 41549 ||| ||||||| | ||||| ||| |||| | | | || | || | || || | ||| Sbjct 238291 TTGCTGAATGGTTATACAATGGCAGTCCTTACGAGCTAATTGTTCTACATTTGTTACTTG 238232 Query 41550 GCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCT 41609 |||| | ||||||||| || ||||||||||||| | || | || ||| | || | Sbjct 238231 GCGTAGCTTGTTACATGGGCCGTAAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTT 238172 Query 41610 GGATCTTTGTTGCGTACTCTGCTC 41633 |||| |||||| || || |||| Sbjct 238171 GGATTGCTGTTGCATATTCAGCTC 238148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146186086221128