Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq1633 114 4e-21 >seq1633 Length=412253 Score = 114 bits (126), Expect = 4e-21 Identities = 262/384 (68%), Gaps = 14/384 (4%) Strand=Plus/Minus Query 42310 ACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCT 42369 ||| | |||| |||||| | | ||||||||||| ||||||| || | | | || Sbjct 238526 ACTGAAAACCATCTTTACATCGAATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACT 238467 Query 42370 GCTACCACCTGT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCAT 42428 || || | ||| |||||| ||| | |||||||| | ||| | |||| ||||| || || Sbjct 238466 GCAACTTC-TGTATTTATTATCGTTGTCATTGCTACTCCTTCAATAGATATTGACGGTAT 238408 Query 42429 TCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGT 42488 |||||||||||| || | ||||| | ||||| |||| || || ||||||||| | | Sbjct 238407 TCGTGAACCTGTTTCCAGGTCTCTATTTTATGGAAACAGTATTATTTCTGGTGCCATTAT 238348 Query 42489 GCCTA--GCAGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTT 42546 |||| | ||| || || || | | || || ||| || ||||| || || Sbjct 238347 TCCTACTTCTGTA--GCTATAGGTTTGCGCTTTTACCCGAGATGAGAAGCGGCGTCCGTT 238290 Query 42547 GACGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCAC-TTCCTTA-TCG 42604 | |||||| | ||||||||| | ||||| |||| | ||||| || || ||| | | Sbjct 238289 GCTGAATGGTTATACAATGGCAGTCCTTACGAGCTAAT--TGTTCTACATTTGTTACTTG 238232 Query 42605 --GTATCTTCTCTTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCC 42662 ||| || | |||| |||| || | ||||||||| | ||| | || ||| | || Sbjct 238231 GCGTAGCT--TGTTACATGGGCCGTAAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCC 238174 Query 42663 CTGGATCTTTGTTGCTTACTCTGC 42686 ||||| |||||| || || || Sbjct 238173 TTGGATTGCTGTTGCATATTCAGC 238150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143505005501236