Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq1633 96.9 1e-15 >seq1633 Length=412253 Score = 96.9 bits (106), Expect = 1e-15 Identities = 260/395 (66%), Gaps = 2/395 (1%) Strand=Plus/Plus Query 41116 GAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACT 41175 |||||| ||||| ||| ||||| || | |||||| | | | | ||||||||||| Sbjct 238148 GAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCACT 238207 Query 41176 GTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTC 41235 | || ||| ||||| || | ||| || || | ||||| || | || || | Sbjct 238208 TACGGCCCATGTAACAAGCTACGCCAAGTAACAAATGTAGAACAATTAGCTCGTAAGGAC 238267 Query 41236 CGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTC 41295 ||| ||||||| ||| || | | | | ||||| || | ||||| || | | | Sbjct 238268 TGCCATTGTATAACCATTCAGCAACGGACGCCGCTTCTCATCTCGGGTAAAAGCGCAAAC 238327 Query 41296 CGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACG 41355 | || || ||| | |||| | || ||||| |||||| |||| || || | || | Sbjct 238328 CTATAGCTACAGAAGTAGGAATAATGGCACCAGAAATAATACTGTTTCCATAAAATAGAG 238387 Query 41356 AGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGA 41415 | | |||||| || ||||| || || || ||||||| | || | || || | ||| Sbjct 238388 ACCTGGAAACAGGTTCACGAATACCGTCAATATCTATTGAAGGAGTAGCAATGACAACGA 238447 Query 41416 TTATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCT 41474 | || || ||| | || ||||| | ||| | || ||||| | ||||||||||| | Sbjct 238448 TAATAAATACA-GAAGTTGCAGTCAATAAAGTAGGGATCATCAAAACACCAAACCATTCG 238506 Query 41475 ACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTT 41509 | ||| || |||| || ||||| || | ||||| Sbjct 238507 ATGTAAAGATGGTTTTCAGTGCTGGTTATACAGTT 238541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143674572658938