Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq2265 506 2e-138 seq1633 156 5e-33 seq6680 98.7 1e-15 seq4464 87.8 2e-12 >seq2265 Length=185284 Score = 506 bits (560), Expect = 2e-138 Identities = 617/839 (74%), Gaps = 3/839 (0%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || |||||||||||||| || || ||||||| || ||||||||| || | Sbjct 95068 ATTAAAGAGCGTTTCCACGGGGCAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 95009 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || |||| ||| | ||||| |||||| || |||||||| || || ||||||| Sbjct 95008 GATCTTGAGTCGCCATCCAAGGACGAATACCTTCGTTTAATAGAATATTTTTGGTGTAGA 94949 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | ||||| || || || |||| ||||| | || || || || || |||||||| |||| Sbjct 94948 AAGTCTCAAATTCGGGATCTTTCGCTGCACGAATTTCCTGAGAAACGAAGTCATAGGCAC 94889 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | ||||| ||||| ||||| | | |||| | || |||| | ||| | || || | Sbjct 94888 GTAGGTTCAGAGCCAGACCGACTACTCCGAGAGCGCTCATCCATAAACCGGTTACTGGTA 94829 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| |||||||||||||| ||||| | |||||| ||| ||||| ||||| || || | Sbjct 94828 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAATCCCAAATATTTGGG 94769 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 |||| |||||||| ||||| |||||||| |||||||||| ||||||| | || || | Sbjct 94768 ACCAAAAGCGGTTAGCAGTGACCATTGAATAAGTTTCTTTAGCTTGAGTTGGGTTAAAAG 94709 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | | ||| || ||||| |||||||||||| | | |||||| || || ||| |||||| Sbjct 94708 CATAGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCCACAGTAGCACCAT 94649 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| || | || | ||| | |||| | ||| | || ||||| |||||||| || | Sbjct 94648 GAATAGCGCATAGAAGAGCAGCGCCCAATACACCGTCAACTCCCATTATATGAAATGGAT 94589 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 |||| ||||| ||||| || ||||| | ||||| | ||||||||| || |||| || | Sbjct 94588 TCAATGTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCTGCTACAC 94529 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 | ||| || || || ||||||| || |||||||| || || || || || ||| || Sbjct 94528 CAAAACTAGGCGCAAAGAACCAACCAGACTGACCCAGTGGATAAATCAGGAATACAGAAA 94469 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA- 67244 ||||||| || || ||| ||||||| | || ||||| || || || || || | | Sbjct 94468 CAAAAACTGCAATTGGAACAGAGAATGTGATTGCATTATAAGGTCGAAT--TGAACAAAT 94411 Query 67245 CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCC 67304 || || |||||||| || || ||||||||||| ||||| |||||| ||||| || || Sbjct 94410 CGAGCAAGTTCAAATTGACGTAGCATGAAACCTATTAGTCCGAAAGTGCCGTGTAGAGCA 94351 Query 67305 ACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGA 67364 |||||| |||| || || || | ||| ||| || ||||| || || | |||||| Sbjct 94350 ACAAAAGTCCACAGACCACCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGA 94291 Query 67365 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGT 67423 ||||| |||| | | |||||| | | | || || ||| || || || || || || Sbjct 94290 CCCCATAGTAACAACAAAGAATGTGCTAAACTATTAGTAGGAGTAGAAACTGCGGCGGT 94232 >seq1633 Length=412253 Score = 156 bits (172), Expect = 5e-33 Identities = 266/381 (70%), Gaps = 6/381 (2%) Strand=Plus/Plus Query 68428 GCAGAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCA 68487 || || ||||||||| |||||||| |||||||| | ||| | ||||||||| | | Sbjct 238150 GCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCACTTA 238209 Query 68488 CGTCCCATGTATGCAAAGATAC--CAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGAC 68545 || |||||||| ||| ||| ||| | || || | | | || | | |||||| Sbjct 238210 CGGCCCATGTAAC--AAGCTACGCCAAGTAACAAATGTAGAACAATTAGCTCGTAAGGAC 238267 Query 68546 CACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGAC 68605 |||||||| ||||| ||| ||| || || ||||| || | || |||||| | | || Sbjct 238268 TGCCATTGTATAACCATTCAGCAACGGACGCCGCTTCTCATCTCGGGTAAAAGCGCAAAC 238327 Query 68606 CAATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTG 68665 | || || ||| |||||| || ||||||||||| || |||| ||||| | || | Sbjct 238328 CTATAGCTACAGAAGTAGGAATAATGGCACCAGAAATAATACTGTTTCCATAAAATAGAG 238387 Query 68666 AACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGA 68725 | | | |||||||||||||||||| || || || | | |||| ||| |||| ||| Sbjct 238388 ACCTGGAAACAGGTTCACGAATACCGTCAATATCTATTGAAGGAGTAGCAATGACAACGA 238447 Query 68726 CGATGAA-ACAGATGGTTGCTGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCA 68784 || || ||||| ||||| | | | ||||||||||||| || || ||||| | Sbjct 238448 TAATAAATACAGA-AGTTGCAGTCAATAAAGTAGGGATCATCAAAACACCAAACCATTCG 238506 Query 68785 ACGTAAAGGCGGTTCTCTGTG 68805 | |||||| |||| || ||| Sbjct 238507 ATGTAAAGATGGTTTTCAGTG 238527 >seq6680 Length=52110 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 66825 ACAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGA 66884 ||||| |||||||||||| | ||||| ||||| || || |||||||| || Sbjct 10757 ACAAATAACATAAAGAAACGTAACCAATGAATATTGAAGAAATAAACCCCAAAGATTTGC 10816 Query 66885 GACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAAT 66944 | ||| ||| |||| ||||| |||||||| ||||||||||| ||||||| | || || Sbjct 10817 GGCCAAAAGTGGTTAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAA 10876 Query 66945 GCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTC 66991 || ||| || ||||| |||||||||||| | | | || |||| Sbjct 10877 GCACGGAATGTATTTGCACCATCACCATCTTCAAATAAAATAATCTC 10923 >seq4464 Length=199901 Score = 87.8 bits (96), Expect = 2e-12 Identities = 188/281 (67%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 66606 GGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTTGATCGATAGGTGCCAACCAT 66665 || ||||| || || ||||| || ||||| ||| | |||||| | | || ||| Sbjct 140036 GGTAGAACCTCCTCAAAGAATATAAGGTTTTTATGAGATTGATCTTGAATTAACATCCAA 140095 Query 66666 GCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGAACGTCTCGAACTCTGGGTCT 66725 ||| ||| |||||| || ||||| || || || ||| || || || || | || | | Sbjct 140096 GCATGAATACCTTCGTTTAATAGGATATTATTGACGTAAAAAGTTTCAAATTTAGGATAT 140155 Query 66726 TCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCA 66785 | | ||| | || ||||| | || ||| |||||||| | ||||| ||| | ||| Sbjct 140156 TTCGTTGCACGAATTTCTTGATAAACGAAGACATAAGCATGTAGGTTTAGACCTAGATTG 140215 Query 66786 ATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAACAAACAACATAAAGAAATGC 66845 | | || || || |||| | ||| | || ||||| |||||||||||||| Sbjct 140216 ACTACTTGGAGAGAGCTCATCCATAAACCGGATAGTGGTACAAATAACATAAAGAAATGT 140275 Query 66846 AACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAGA 66886 | | || |||||| ||| |||| |||||||| || || Sbjct 140276 ACTTAACTTTTATTGGAAAAAGCAACCCCAAAGATTTGGGA 140316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571937793861240