Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1118 105 1e-17 seq596 87.8 3e-12 seq335 84.2 4e-11 >seq1118 Length=308725 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||| || | ||||| |||| ||||| || | || || ||||| ||||| | Sbjct 111096 CCACCCCTAAGACGAAGAACCAAGTGCAAAGTGGATTCCTTTTGGATATTGTAGTCTGCA 111155 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | || | ||| || | ||||| || |||||||| || ||||| || || || || Sbjct 111156 AGAGTGCGGCCATCTTCAAGCTGTTTACCTGCAAAAATCAACCTCTGCTGGTCGGGTGGG 111215 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 |||||||| || || || || |||| || | ||| ||| ||||| ||| ||||| Sbjct 111216 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTATCAGAACTTTCAACC 111275 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || | ||| ||||| || || || || || || ||||||||||||||| Sbjct 111276 TCCAAAGTGATAGTCTTGCCGGTAAGAGTCTTCACAAATATTTGCATT 111323 >seq596 Length=631412 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || |||||||| | | |||||||| | || | ||| || || || ||||||| Sbjct 343401 CCTCCTCTCAACCTCAACACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 343342 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || || ||| || || | ||||||||||| || || | | || || || || || Sbjct 343341 AAAGTCCTACCGTCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGGG 343282 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || ||||| || ||||| || || | ||| | || ||| || || || ||||| || Sbjct 343281 ATGCCTTCCTTGTCTTGGATCTTTGCTTTCACGTTGTCAATGGTGTCCGAGGACTCCACC 343222 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || ||||| ||||| || || || |||||| Sbjct 343221 TCCAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATT 343174 >seq335 Length=478728 Score = 84.2 bits (92), Expect = 4e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 ||||| || | ||| | ||| || ||||| ||||| | | |||| ||| || Sbjct 394854 ACCAGGTGAAGTGTCGACTCCTTTTGGATATTGTAGTCAGCAAGGGTTCGGCCATCTTCC 394795 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 193267 ||||||||||| |||||||| |||||||| ||||||||||| || |||||||| || Sbjct 394794 AATTGTTTTCCAGCAAAAATCAATCTCTGCTGATCAGGAGGGATACCTTCTTTGTC 394739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899471016696240