Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1118 95.1 2e-14 seq347 89.7 8e-13 >seq1118 Length=308725 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| ||||||| ||||||||||||||||| || | || || || ||| Sbjct 110866 ATGCAGATTTTTGTTAAAACTTTGACTGGAAAAACTATCACTCTTGAGGTTGAGAGTTCG 110807 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || || || || || || ||||| || || ||||| || Sbjct 110806 GACACCATTGATAATGTTAAGTCAAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAG 110747 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||| || |||||||| || ||| | ||| | ||||||||||| Sbjct 110746 CAGAGGTTGATCTTTGCGGGGAAGCAGCTGGAGGATGGGCGTACTCTTGCAGATTATAAT 110687 Query 156003 AT 156004 || Sbjct 110686 AT 110685 Score = 89.7 bits (98), Expect = 8e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || | || || || ||||| || || || || ||| |||| Sbjct 111322 ATGCAAATATTTGTGAAGACTCTTACCGGCAAGACTATCACTTTGGAGGTTGAAAGTTCT 111263 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || || || || || || ||||| || || || || || Sbjct 111262 GATACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCCGACCAG 111203 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| ||||| ||||| |||||| | | ||| | |||| || ||| Sbjct 111202 CAGAGGTTGATTTTTGCAGGTAAACAGCTTGAAGATGGCCGCACTCTTGCAGACTACAAT 111143 Query 156003 AT 156004 || Sbjct 111142 AT 111141 >seq347 Length=438793 Score = 89.7 bits (98), Expect = 8e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| |||||||||||||| || || | || || || ||| Sbjct 270135 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAAACCATCACCCTTGAGGTTGAGAGTTCG 270076 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || ||| || || || || || ||||| || || | ||| || Sbjct 270075 GACACCATTGAAAATGTAAAAGCAAAGATTCAGGACAAGGAAGGGATTCCACTAGATCAG 270016 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||| || |||||||| || ||| | ||| | ||||||||||| Sbjct 270015 CAGAGGTTGATCTTTGCAGGGAAGCAGCTGGAGGATGGGCGCACTCTTGCAGATTATAAT 269956 Query 156003 AT 156004 || Sbjct 269955 AT 269954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731722817041200