Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1118 100 5e-16 seq347 96.9 6e-15 >seq1118 Length=308725 Score = 100 bits (110), Expect = 5e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | || || | || | ||| | ||||| ||| || ||||||||||||| Sbjct 110639 ACCACCACGCAGGCGAAGAACAAGATGCAGAGTAGACTCCTTCTGGATATTATAATCTGC 110698 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || || | || |||| || || || ||||| || || ||||| ||||| ||||| Sbjct 110699 AAGAGTACGCCCATCCTCCAGCTGCTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGTGG 110758 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || || || || || || |||||| || || || || || || Sbjct 110759 GATCCCTTCCTTGTCCTGAATCTTTGACTTAACATTATCAATGGTGTCCGAACTCTCAAC 110818 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || ||||| ||||| || ||||||| || |||||||| Sbjct 110819 CTCAAGAGTGATAGTTTTTCCAGTCAAAGTTTTAACAAAAATCTGCAT 110866 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| || ||||||| || || || | || | ||| || ||| |||||||| Sbjct 111321 ATTCCACCCCTGAGTCGTAGGACCAAGTGGAGGGTGGACTCCTTTTGAATGTTATAATCA 111380 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || | || || | |||||||||||| || || | || |||||||| || Sbjct 111381 GCAAGAGTGCGGCCATCTTCAAGTTGTTTACCAGCGAAGATCAGCCTTTGTTGGTCTGGA 111440 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || || || ||||| || || || || || Sbjct 111441 GGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCA 111500 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| |||||||| ||||| | ||||| | || |||||||| Sbjct 111501 ACCTCGAGAGTTATGGTTTTGCCAGTGAGGGTTTTCACAAAAATCTGCAT 111550 >seq347 Length=438793 Score = 96.9 bits (106), Expect = 6e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | || || | || | ||| | ||||| ||| || |||||||||||||| Sbjct 269908 ACCACCACGCAGGCGAAGAACAAGATGCAGAGTAGACTCCTTCTGAATATTATAATCTGC 269967 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || || | || |||| || || || ||||| || || ||||| || || |||| Sbjct 269968 AAGAGTGCGCCCATCCTCCAGCTGCTTCCCTGCAAAGATCAACCTCTGCTGATCTAGTGG 270027 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || || || || || ||||||||| || || || || || || Sbjct 270028 AATCCCTTCCTTGTCCTGAATCTTTGCTTTTACATTTTCAATGGTGTCCGAACTCTCAAC 270087 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || |||||||| ||||| || ||||| | || |||||||| Sbjct 270088 CTCAAGGGTGATGGTTTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 270135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904951499340600