Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq55 114 4e-20 seq3231 111 5e-19 seq182 102 2e-16 seq1409 96.9 1e-14 seq1829 91.5 4e-13 seq1772 84.2 6e-11 >seq55 Length=669307 Score = 114 bits (126), Expect = 4e-20 Identities = 276/415 (67%), Gaps = 6/415 (1%) Strand=Plus/Minus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| |||||||| || | | ||| || | |||||| || |||||||||||| | Sbjct 257472 TAAAACCATCCATTTCAGTAAGCAATTGGTTCAATGTTTGCTCTCTTTCATCATTTCCTC 257413 Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 | | |||| || | | | ||| | | || ||||||||||| |||||||| || | Sbjct 257412 CAC--CAATC-CCTGTA---CCCCTCTGCCTCCCTACAGCATCAATCTCGTCAATAAACA 257359 Query 289058 TCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAA 289117 | || || || ||| | || | || || ||||| || | |||||||| | Sbjct 257358 CTAAGCAAGGCGAGTTTGCCTTTGCCTTGTTGAACAAGTCTCTCACTCTCGATGCTCCTA 257299 Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTT 289177 || ||| |||| || | ||| || || | |||| || ||| | || ||||| Sbjct 257298 CGCCGACAAACATCTCAATAAACTCTGATCCAGATAGCGAAAAGAACGGAACTCCTGCTT 257239 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | || |||| ||| | |||| | |||||| || || || ||||| ||| |||| |||| Sbjct 257238 CTCCGGCTATAGCCTTAGCCAACAATGTCTTTCCAGTCCCTGGTGGCCCCACTAAAAGAA 257179 Query 289238 CTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTA 289297 |||| ||||| | |||||| || | || | ||||| ||| | | | || || | Sbjct 257178 CTCCTTTTGGGATTTTTGCTCCGATTGCGGTAAACTTCTCCGGGGTTCTCAGGAACTCAA 257119 Query 289298 CAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | ||||| | || || | || || |||||| ||| || |||||| |||| || Sbjct 257118 CGATTTCTTGAAAATCTTGCTTGGCTTCATCAACTCCAGCAACATCATCAAATGT 257064 >seq3231 Length=135437 Score = 111 bits (122), Expect = 5e-19 Identities = 157/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| ||||||||||| || ||||| ||||| || ||||| | |||||| || | | Sbjct 17976 TACCCTTCCTCTTGCCCCCTCCTTGATCCACATAACGGGCAGTATCATTGAACACCCGCA 18035 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 |||| |||| ||| ||||| ||||| ||||| ||||| ||||||| ||||| | | Sbjct 18036 GCATCGGAACAATGCCATTAGAAGTCCCATTTGTTCCACGAATATAACTACCAGTGGCAC 18095 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 ||| ||||||| | || ||||| || || | |||| || ||| || || | Sbjct 18096 GAATGTTATGAACAGATACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCTT 18155 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | | ||||| | |||||||||||| ||||||| ||| Sbjct 18156 TCAGAGTATCATATATACCTTCAATACTGTCATCTTTCAT 18195 Score = 86.0 bits (94), Expect = 2e-11 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 156283 AACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAAT 156342 ||| || |||||||| |||||||||||| ||||| || ||||||| |||||| | || Sbjct 18300 AACATACTTGAGGTCTTGGTGTTCCAGCATTGAAAAGGGTAGGTGAAGCATGAGTGAACC 18359 Query 156343 ACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATAC 156402 || | |||||| || |||||| | ||| |||| || | | ||| || | Sbjct 18360 ACCGTTGAGACATCATATGGTATGTTTTGATAACAGAGTCAATATCATCCTTGTGGATTC 18419 Query 156403 AGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAA 156444 | ||| |||||||| ||||||| ||||| | |||||||| Sbjct 18420 CAACAGAAACCCTCATTAACATATGTTGAGGTCTCTCTACAA 18461 >seq182 Length=789423 Score = 102 bits (112), Expect = 2e-16 Identities = 336/513 (65%), Gaps = 26/513 (5%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 || ||||||| |||| | ||| || | ||| | || || || ||||| |||||| Sbjct 233538 CTGTCAAACCGTCCAGGCCTCAATAAGGCAGAGTCAAGAATGTCAGCCCTGTTAGTTGCT 233597 Query 288910 GCCAATACAACAATAGATTCGGTTTG---CTTAAATCCATCCATACTTGTTAAAATTTGA 288966 || | |||| |||| | || | || ||| |||||||| ||| | || || Sbjct 233598 GCAATAACAATAATAC---CAGTATTACCCTCAAAACCATCCATTTCTGTCAGAAGCTGG 233654 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATC--GCTCCttt 289024 ||||| || ||||| |||||||||||| |||| || || | || | |||| | Sbjct 233655 TTAAGGGTCTGTTCTCTTTCATCATTT---CCTC------CA-CCAATTCCAGTTCCTCT 233704 Query 289025 tttt--ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 || | || |||||||||||||| || | || | | ||| |||| ||| | | | || Sbjct 233705 TTGTCGTCCGACAGCATCAATTTCATCCACAAATACAATACAAGGAGCATTCTCTTTGGC 233764 Query 289083 --AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 ||| ||| | || | || | || || |||| ||| ||| ||||||| ||||| Sbjct 233765 CTTCTTGAAAAGA--TCACGGACTCTAGAGGCACCAACACCCACAAACATTTCAACAAAC 233822 Query 289141 TCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAG 289199 || ||| | || | | || | |||| ||| ||||| || || | ||| | || || Sbjct 233823 TCGGAACCTGAGA-TGGAGAAAAATGGAACACCAGCTTCACCAGCAATTGCTTTGGCTAG 233881 Query 289200 AAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 ||| ||||| || ||||| || || || | | ||||| || ||||| | || || Sbjct 233882 AAGAGTCTTCCCAGTTCCCGGAGGGCCAACAAGAAGAACACCTTTTGGAATGCGGGCTCC 233941 Query 289260 AGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTT 289319 | || | | |||||| |||| ||||| || || | ||| | || | || Sbjct 233942 AATAGCAGTGAACCGCTCAGGCTTCTTCAAAAACTCCACCACCTCCATGAAATCTTGCTT 234001 Query 289320 TGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 |||||| ||| ||| || |||||| |||| || Sbjct 234002 TGCCTCGTCAACTCCAGCAACATCATCAAATGT 234034 >seq1409 Length=247826 Score = 96.9 bits (106), Expect = 1e-14 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 ||| |||||||| || || |||||| | |||| | | || | || |||| ||| Sbjct 110366 ACAAACATGGACCCTATATGCATCACTTTGGTCAAACAACCTCTCTTTAAGGAAGTGAGC 110307 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 ||||| || | |||||| ||||| || |||||||| || || |||||||||||||| || Sbjct 110306 AGCACCATGAGCAATCATGCAATCTCGTTCCATTTCCCCAAACCGAAGACCACCATCACG 110247 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGA 251574 | | ||||| |||||||| || |||||| Sbjct 110246 GGATCGCCCCTCTGCAGGCTGCCGTGTGAGA 110216 >seq1829 Length=262397 Score = 91.5 bits (100), Expect = 4e-13 Identities = 105/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 301828 CGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATTC 301887 ||||||||||| | || || || ||| || |||||||||| | ||||| || || Sbjct 250002 CGGGGAACACCGAGAGTGACATTCT--TTGCACT-AACACCAGCATAATGGAAGGTGTTA 250058 Query 301888 AGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTCT 301947 ||||| | ||||||| ||||||||||||| ||||| |||| ||||| ||||||| Sbjct 250059 AGAGTCATCTGAGTAGCTGGCTCACCAATAGACTGTGCAGCAACACAACCAATCATTTCT 250118 Query 301948 CCTGGTGCTACAATAGACT 301966 || |||||||| | |||| Sbjct 250119 CCCGGTGCTACTAATGACT 250137 >seq1772 Length=569958 Score = 84.2 bits (92), Expect = 6e-11 Identities = 212/318 (67%), Gaps = 6/318 (2%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| ||||| || || ||||| |||| | || |||| | |||||||| | Sbjct 186600 ACCAATTGCATCGATCTCATCAATAAAAACTATACTAGGAGCACACTGTCTCGCTTCTTG 186659 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| || | ||| || | || | ||||| ||||||| ||||||| | || || ||| | Sbjct 186660 AAACAAGTTTCTAACCCTAGAGGGTCCAACACCAACAAACATTTCCATGAAATCTGAACC 186719 Query 289149 GGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 || | || | ||| | ||| | || ||||| ||| | || ||||| |||| Sbjct 186720 ACTTA-TAGATAGGAAAGGCACACCAGACTCTCCTGCAGTTGCTTTTGCTAGAAGGGTCT 186778 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA-- 289265 | ||||| || || || || | | ||| | || ||||| | | |||| | ||| Sbjct 186779 TCCCTGTGCCTGGAGGACCAACCAGTAGTGCACCTTTTGGAATTGTTGCT--AACAGTTC 186836 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 || ||| |||| ||| |||| | || | |||| ||| || ||| | |||||||| Sbjct 186837 CTCATACTTCTTAGGATTCTTGAGGAAGTGCACAAACTCCATAATTTCTTGCTTTGCCTC 186896 Query 289326 ATCACATCCTGCTACATC 289343 |||||| || || ||||| Sbjct 186897 ATCACAGCCAGCAACATC 186914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471510088089459