Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq2265 453 1e-122 seq1633 125 8e-24 >seq2265 Length=185284 Score = 453 bits (502), Expect = 1e-122 Identities = 584/805 (73%), Gaps = 7/805 (1%) Strand=Plus/Plus Query 159510 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAA 159569 |||||| | | |||| ||||||||||| | || || |||| || ||||| ||| Sbjct 94268 CATTCTTTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAA 94327 Query 159570 CTTGGGGGATTATGGAATTTTGTGGCACTCCACGGTGCCTTCGCCCTAATTGGTTTCATG 159629 | || || | |||| |||||| || || ||||| | |||| ||||| ||||||||| Sbjct 94328 TTAGGTGGTCTGTGGACTTTTGTTGCTCTACACGGCACTTTCGGACTAATAGGTTTCATG 94387 Query 159630 CTCCGTCAGTTTGAACTGGCACGTCTCATTGGT---ATCCGTCCTTACAATGCTATTGCG 159686 || ||||| |||||||| || || ||| || || || ||||| ||||| || | Sbjct 94388 CTACGTCAATTTGAACTTGCTCG----ATTTGTTCAATTCGACCTTATAATGCAATCACA 94443 Query 159687 TTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTCATCTACCCATTGGGTCAGTCC 159746 ||||||| ||| ||||| |||||||| || ||||| || || ||| |||||||||| Sbjct 94444 TTCTCTGTTCCAATTGCAGTTTTTGTTTCTGTATTCCTGATTTATCCACTGGGTCAGTCT 94503 Query 159747 AGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTT 159806 ||||||| || || || ||||| || ||||| || ||| ||||| | | || | Sbjct 94504 GGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTC 94563 Query 159807 CAAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAGTTGCTGGTATACTA 159866 ||||| ||||| || ||||| || ||||| || ||||| |||||||||| ||| || | Sbjct 94564 CAAGGGTTTCATAATTGGACATTGAATCCATTTCATATAATGGGAGTTGACGGTGTATTG 94623 Query 159867 GGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGAT 159926 || | || || || | || || ||||| | |||||| || || || | | ||||||| Sbjct 94624 GGCGCTGCTCTTCTATGCGCTATTCATGGTGCTACTGTGGAAAATACTTTATTTGAAGAT 94683 Query 159927 GGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTACTCT 159986 || || |||||||| || | || ||| | ||||||||| | || ||||| || Sbjct 94684 GGTGATGGTGCAAATACATTCTATGCTTTTAACCCAACTCAAGCTAAAGAAACTTATTCA 94743 Query 159987 ATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGG 160046 ||||||||||| |||||||| ||||| || || || || ||||| ||||| || || || Sbjct 94744 ATGGTCACTGCTAACCGCTTTTGGTCCCAAATATTTGGGATTGCTTTTTCCAATAAACGT 94803 Query 160047 TGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGC 160106 ||| | |||||||| ||||| ||||| || || | ||| | |||| | || | || Sbjct 94804 TGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGCGCTCTCGGA 94863 Query 160107 ATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCA 160166 | | || || ||||| || || ||||| || || ||||| ||| || || | ||| Sbjct 94864 GTAGTCGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGCA 94923 Query 160167 GCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAACGAAGGACTA 160226 || ||||||| ||||||||||| |||||||||||||| || ||||| |||||||| | Sbjct 94924 GCGAAAGATCCCGAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACGAAGGTATT 94983 Query 160227 CGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTA 160286 ||| | ||| |||| || ||||| || ||||||||| |||| ||||| || || || Sbjct 94984 CGTCCTTGGATGGCGACTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTT 95043 Query 160287 TTGCCTAGAGGCAACGCCCTTTAAT 160311 |||| | || ||||| ||||||| Sbjct 95044 CTGCCCCGTGGAAACGCTCTTTAAT 95068 >seq1633 Length=412253 Score = 125 bits (138), Expect = 8e-24 Identities = 257/376 (68%), Gaps = 6/376 (2%) Strand=Plus/Minus Query 157607 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACC 157666 |||| || || ||| ||||| || || ||||||| || ||| | ||| | ||||| Sbjct 238520 AACCATCTTTACATCGAATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACTGCAACT 238461 Query 157667 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 157725 ||||| || || ||| || | ||| |||| | | || || ||||| || ||||| Sbjct 238460 -TCTGTATTTATTATCGTTGTCATTGCTACTCCTTCAATAGATATTGACGGTATTCGTGA 238402 Query 157726 ACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATC 157785 ||| || | | || || | ||||| |||| || || |||||||| || | || | Sbjct 238401 ACCTGTTTCCAGGTCTCTATTTTATGGAAACAGTATTATTTCTGGTGCCATTATTCCTAC 238342 Query 157786 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTG 157845 ||| || || ||| | | ||| || || | || ||||| || || ||| ||| || Sbjct 238341 TTCTGTAGCTATAGGTTTGCGCTTTTACCCGAGATGAGAAGCGGCGTCCGTTGCTGAATG 238282 Query 157846 GCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGG--TATCTAT 157903 | | || || || |||||| | | || | || | || || | |||| || || | Sbjct 238281 GTTATACAATGGCAGTCCTTACGAGCTAATTGTTCTACATTTGTTACTTGGCGTAGCT-T 238223 Query 157904 GCATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGT 157963 | |||||||| ||| ||||||||||| | |||||| ||||||||||| ||||| | Sbjct 238222 GT-TACATGGGCCGTAAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCT 238164 Query 157964 GTAGCATATTCTGCTC 157979 || |||||||| |||| Sbjct 238163 GTTGCATATTCAGCTC 238148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548262620733240