Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq2265 506 2e-138 seq1633 158 1e-33 seq6120 84.2 2e-11 seq6888 82.4 8e-11 >seq2265 Length=185284 Score = 506 bits (560), Expect = 2e-138 Identities = 614/834 (74%), Gaps = 3/834 (0%) Strand=Plus/Plus Query 152539 ACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGT 152598 || || |||||||||||||| | || | | | |||||| | || | || |||||| Sbjct 94232 ACCGCCGCAGTTTCTACTCCTACTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGT 94291 Query 152599 CCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTTGTG 152658 ||||| || ||||| ||||| | ||| ||| | || || || ||| ||||||| Sbjct 94292 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 94351 Query 152659 GCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGCACG- 152717 || || ||||| |||||| ||||| ||||||||||| || || |||||||| || || Sbjct 94352 GCTCTACACGGCACTTTCGGACTAATAGGTTTCATGCTACGTCAATTTGAACTTGCTCGA 94411 Query 152718 TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGT 152777 | | || || || || || ||||| || | ||||||| ||| || || |||||||| Sbjct 94412 TTTGTTCA--ATTCGACCTTATAATGCAATCACATTCTCTGTTCCAATTGCAGTTTTTGT 94469 Query 152778 TAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGG 152837 | || || || || || || |||||||| || ||||||| || || || ||| || Sbjct 94470 TTCTGTATTCCTGATTTATCCACTGGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGG 94529 Query 152838 GGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAA 152897 || ||||| || || |||||| | ||||| | ||||| || || || ||||||||||| Sbjct 94530 TGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 94589 Query 152898 TCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCA 152957 ||| |||||||| ||||| |||| ||| | ||||| | || | || | || ||||| Sbjct 94590 TCCATTTCATATAATGGGAGTTGACGGTGTATTGGGCGCTGCTCTTCTATGCGCTATTCA 94649 Query 152958 TGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTTCAAAGC 153017 ||||| ||| || || |||||||| | | |||||||||| ||||| || ||| | || Sbjct 94650 TGGTGCTACTGTGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCTATGC 94709 Query 153018 TTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTC 153077 ||| || ||||||| |||| || ||||| ||||| ||||||||||| || ||||| Sbjct 94710 TTTTAACCCAACTCAAGCTAAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTC 94769 Query 153078 CCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGT 153137 ||| |||||||| ||||||||| ||||||||| ||| | |||||||||||| | ||||| Sbjct 94770 CCAAATATTTGGGATTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 94829 Query 153138 ACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCG 153197 ||| || | ||| | |||| || | ||| | | ||||| ||||| || || || Sbjct 94830 ACCAGTAACCGGTTTATGGATGAGCGCTCTCGGAGTAGTCGGTCTGGCTCTGAACCTACG 94889 Query 153198 TGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTT 153257 ||| || || || || ||||| ||||| | || | ||||||| ||||||||||| || Sbjct 94890 TGCCTATGACTTCGTTTCTCAGGAAATTCGTGCAGCGAAAGATCCCGAATTTGAGACTTT 94949 Query 153258 CTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTGACCA 153317 ||| || || ||||| || || ||||||||| ||||| ||||| |||| || || || Sbjct 94950 CTACACCAAAAATATTCTATTAAACGAAGGTATTCGTCCTTGGATGGCGACTCAAGATCA 95009 Query 153318 ACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTCT 153371 |||||||| ||| | | |||||||| ||||| |||| || || |||||||| Sbjct 95010 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTGCCCCGTGGAAACGCTCT 95063 >seq1633 Length=412253 Score = 158 bits (174), Expect = 1e-33 Identities = 268/382 (70%), Gaps = 6/382 (2%) Strand=Plus/Minus Query 150860 ACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCTGATGATTCCAACTCTGTTGGCA 150919 ||| | |||| ||| || ||| ||||| ||||| ||||||| || ||| | ||| | Sbjct 238526 ACTGAAAACCATCTTTACATCGAATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACT 238467 Query 150920 GCAACCATTTGCTTCATCGTGGCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATC 150979 ||||| | || || | | |||| ||| |||| | | || || || || || Sbjct 238466 GCAACTTCTGTATTTATTATCGTTGTCATTGCTACTCCTTCAATAGATATTGACGGTATT 238407 Query 150980 CGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTT 151039 |||||||| ||| | | ||||| | || || |||| || || |||||||| || || Sbjct 238406 CGTGAACCTGTTTCCAGGTCTCTATTTTATGGAAACAGTATTATTTCTGGTGCCATTATT 238347 Query 151040 CCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGAT 151099 ||| ||||| ||||| ||| ||| ||| || || | || ||||| || || | | | Sbjct 238346 CCTACTTCTGTAGCTATAGGTTTGCGCTTTTACCCGAGATGAGAAGCGGCGTCCGTTGCT 238287 Query 151100 GAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTCTTCCACTTCCTGATTGG--TA 151157 |||||| | ||||| || |||||| | | || |||| | || || | |||| || Sbjct 238286 GAATGGTTATACAATGGCAGTCCTTACGAGCTAATTGTTCTACATTTGTTACTTGGCGTA 238227 Query 151158 TCTATGCTTACATGGGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGA 151217 || || ||||||||| ||| |||||||||| || ||| ||||||||||| || |||| Sbjct 238226 GCT-TG-TTACATGGGCCGTAAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGA 238169 Query 151218 TCTGC-GTTGCATACTCTGCTC 151238 | ||| |||||||| || |||| Sbjct 238168 T-TGCTGTTGCATATTCAGCTC 238148 >seq6120 Length=94228 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 151766 CTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCT 151825 || ||||||||||||||||| || ||||||||||| ||||||||||| ||||| |||||| Sbjct 53908 CTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 53967 Query 151826 G 151826 | Sbjct 53968 G 53968 >seq6888 Length=93857 Score = 82.4 bits (90), Expect = 8e-11 Identities = 178/263 (68%), Gaps = 4/263 (2%) Strand=Plus/Plus Query 152359 TTTGATGTCCTGGATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCTGGA 152418 |||||| | |||||||||| | | || || | |||| ||||| | ||||||| || Sbjct 14189 TTTGATATGATGGATGACTGATTACAAAGGGATCATTTCATTTTTATAGGTTGGTTCGGT 14248 Query 152419 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 152478 | | || |||||| ||| ||| |||| | | |||||| ||| || || || || Sbjct 14249 TTATTGCTCTTTCCCTATGCCTATTTTGCCTTAAGGGGTTGGTTTAGGGGTACAACCTTT 14308 Query 152479 GCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTT-TCT 152537 | |||||||| || || ||| | ||||| ||| |||| ||| ||||| ||| Sbjct 14309 ATAATTTCATGGTATACCCATGGATTGACTAGTTCTTATTTGGAAGGCTGCAACTTCTCT 14368 Query 152538 TACTGCGGCA--GTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGG 152595 || | || || |||||||||| || || | | |||||| | | | | ||| Sbjct 14369 TAAT-CGTCATAGTTTCTACTCTTGCTAATAGTTTAACACATTCTTTGTTATTATTATGG 14427 Query 152596 GGTCCTGAGGCTCAAGGGGATTT 152618 |||||||| || ||||| ||||| Sbjct 14428 GGTCCTGAAGCACAAGGAGATTT 14450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549510366344040