Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq2265 273 2e-68 seq1633 109 6e-19 >seq2265 Length=185284 Score = 273 bits (302), Expect = 2e-68 Identities = 577/860 (67%), Gaps = 22/860 (3%) Strand=Plus/Plus Query 73542 TAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGG 73601 |||| || ||||| || || ||| | || | | | ||| | | ||||| || |||| Sbjct 94230 TAACCGCCGCAGTTTCTACTCCTACTAATAGTTTAGCACATTCTTTGTTGTTACTATGGG 94289 Query 73602 GACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTG 73661 | || || |||||||||||| || || |||| |||||||||||| || |||| |||| Sbjct 94290 GTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTG 94349 Query 73662 TAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAG 73721 | || |||| || || ||||| |||||||||||||| | || ||||| |||| Sbjct 94350 TTGCTCTACACGGCACTTTCGGACTAATAGGTTTCATGCTACGTCAATTTGAACTTGCTC 94409 Query 73722 GACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCA 73781 || ||||| || || ||||| || ||| | | || || | || ||||| || Sbjct 94410 GATTTGTT-CAATTCGACCTTATAATGCAATCACATTCTCTGTTCCAATTGCAGTTTTTG 94468 Query 73782 CGAGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCG 73841 | || || || ||||| | || ||| | |||||||||| || ||| || | Sbjct 94469 TTTCTGTATTCCTGATTTATCCACTGGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTG 94528 Query 73842 GTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTA 73901 |||| ||||| || ||||| | || | || | || || || || ||| || | | Sbjct 94529 GTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGA 94588 Query 73902 ATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATAC 73961 ||||||||||||| ||||| || | ||| || | || | || | ||||| || || | Sbjct 94589 ATCCATTTCATATAATGGGAGTTGACGGTGTATTGGGCGCTGCTCTTCTATGCGCTATTC 94648 Query 73962 ATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGA 74021 ||||||| || || | || || || | |||||| || | | | Sbjct 94649 ATGGTGCTACTGTGGAAAATACTTTATTTGAAGA---------------TG--GTGATGG 94691 Query 74022 TTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTATGA 74081 | ||| |||| ||| || || | || || || | |||| |||||| ||| Sbjct 94692 TGCAA-ATACA---TTCTATGCTTTTAACCCAACTCAAGCTAAAGAAACTTATTCAATGG 94747 Query 74082 TTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCT 74141 | ||||||||| | || ||||| || |||||||| || || ||||| || ||| | | | Sbjct 94748 TCACTGCTAACCGCTTTTGGTCCCAAATATTTGGGATTGCTTTTTCCAATAAACGTTGGT 94807 Query 74142 TACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCG 74201 |||| ||| ||||||| || ||||| || | ||| | |||| || | || | | Sbjct 94808 TACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGCGCTCTCGGAGTAG 94867 Query 74202 TAGGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAG 74261 | ||||| || || ||||| | || || ||||| || ||||| || || | ||||| Sbjct 94868 TCGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGCAGCGA 94927 Query 74262 AAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAG 74321 |||| || || ||||| || |||||||| || || ||||| | || |||||||| | Sbjct 94928 AAGATCCCGAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGTC 94987 Query 74322 CATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGC 74381 | |||||| | || ||||| || ||||| ||| || | ||||| || || || ||| Sbjct 94988 CTTGGATGGCGACTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTGC 95047 Query 74382 CACGAGGCAACGCACTATAA 74401 | || || ||||| || ||| Sbjct 95048 CCCGTGGAAACGCTCTTTAA 95067 >seq1633 Length=412253 Score = 109 bits (120), Expect = 6e-19 Identities = 236/353 (67%), Gaps = 0/353 (0%) Strand=Plus/Minus Query 72280 TGGTTTGGTGTCTTAATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCA 72339 ||||||||||| || |||||||| | | | ||||| || || || ||| | | Sbjct 238502 TGGTTTGGTGTTTTGATGATCCCTACTTTATTGACTGCAACTTCTGTATTTATTATCGTT 238443 Query 72340 TTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTC 72399 |||| ||| ||||| || | ||||| ||||| || | ||||| ||| | | ||| | Sbjct 238442 GTCATTGCTACTCCTTCAATAGATATTGACGGTATTCGTGAACCTGTTTCCAGGTCTCTA 238383 Query 72400 TTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTA 72459 || ||||| |||| || || |||||||| | |||| |||| || ||||| || Sbjct 238382 TTTTATGGAAACAGTATTATTTCTGGTGCCATTATTCCTACTTCTGTAGCTATAGGTTTG 238323 Query 72460 CACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCT 72519 | ||| || || | || ||||| || | | | || ||||| || || || ||||| Sbjct 238322 CGCTTTTACCCGAGATGAGAAGCGGCGTCCGTTGCTGAATGGTTATACAATGGCAGTCCT 238263 Query 72520 TACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGG 72579 ||| || || || || | || || | |||| | || |||||||| | ||||| Sbjct 238262 TACGAGCTAATTGTTCTACATTTGTTACTTGGCGTAGCTTGTTACATGGGCCGTAAGTGG 238203 Query 72580 GAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGC 72632 ||||| | | | | || ||| | |||||||| ||| ||||| ||||| Sbjct 238202 GAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGC 238150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572756826877560