Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq339 235 7e-56 seq1970 91.5 2e-12 >seq339 Length=880584 Score = 235 bits (260), Expect = 7e-56 Identities = 228/293 (78%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||| ||||||||||||||||| ||||| | |||| || || ||| Sbjct 293433 GAGTGGATGTTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCGACCTGG 293492 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 | ||| ||||||| |||||||| ||||||||| |||||||||||| ||||||||| Sbjct 293493 ATCTCGGTCATGAAACGGCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAG 293552 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||| ||| ||| |||||| ||||||| | | | | |||||||| | Sbjct 293553 AAGGCGAGGATGTGAGAGATGAAGTGGGTCTCGTCGGGGGTTAAGGCTTCCCAGTGGCGG 293612 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||||| | ||| || ||||||||||||||||||| |||||||||||||| |||||| Sbjct 293613 GTGTCCTGGGAGAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTAC 293672 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 |||||||| | || | |||| |||| ||||| | | || |||| ||||| Sbjct 293673 ATCTCCCAGATTTCCGGGTACTGGATGGGGAACATGCAGAAACGGTCCGGGTT 293725 Score = 187 bits (206), Expect = 3e-41 Identities = 208/278 (75%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233 ||| |||||||||| || | || |||||| |||| ||| || |||||||| || Sbjct 293148 TGCAAACCTTCGTCACGTGACACCAACTCGTTGGAGAAGGTGAGTCCTGGCATGAGACCC 293207 Query 869234 CGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCG 869293 |||||||| |||||||| |||| |||||| || || ||||| ||||| || || ||| Sbjct 293208 CGCTTCTTCAGCCAAAATATGGAGCAGAAGCTCCCGGAGAAGAAGATCCCTTCCACGCAA 293267 Query 869294 GCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATC 869353 |||||| ||| || || |||||| ||||| ||| || ||||||||||||| || Sbjct 293268 GCAAAGGCGACGATCCTCTCGGCGAAGGTCTCGGAGC------TGTTGATCCACTTGATG 293321 Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCC 869413 ||||| || ||||| | ||| |||||||||| ||||||||| | |||||| ||| | Sbjct 293322 GCCCAATCCGCCTTCCTGGCCACGCACGGCACCGTCTCGATGGCGTGGAAGAGGCGGTGC 293381 Query 869414 TTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 || | | | |||||||| ||||| |||| |||||| Sbjct 293382 TTGACCTCTGAGTCCTTGATGTAGGTCTCGAGCAGGAG 293419 >seq1970 Length=306724 Score = 91.5 bits (100), Expect = 2e-12 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 1592132 TGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCC 1592191 |||||| ||||| | | || || || ||||||||||||| | ||| | || || Sbjct 225592 TGGGACGCTGAGTTCGTCAAGGTTGATCAAGCCACCCTCTTTGATCTCATCTTGGCTGCA 225533 Query 1592192 AACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATC 1592251 ||||| | |||||||| |||| || || ||| || | || || |||||||| Sbjct 225532 AACTATTTGAACATCAAGAGCTTGCTGGACCTGACTTGCCAGACAGTTGCAGACATGATC 225473 Query 1592252 AAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||| || | || ||||||||||||||||| || ||||||||| Sbjct 225472 AAGGGAAAAACTCCAGAGGAGATCCGCAAGACATTCAACATCAAG 225428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105800971214319