Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq339 217 2e-50 seq1970 87.8 3e-11 >seq339 Length=880584 Score = 217 bits (240), Expect = 2e-50 Identities = 243/325 (75%), Gaps = 6/325 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||||||||| || | ||| |||||| ||| ||| || |||||||| || ||||| Sbjct 293153 ACCTTCGTCACGTGACACCAACTCGTTGGAGAAGGTGAGTCCTGGCATGAGACCCCGCTT 293212 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| |||||||| |||| ||||| || || ||||| ||||| || || ||| ||||| Sbjct 293213 CTTCAGCCAAAATATGGAGCAGAAGCTCCCGGAGAAGAAGATCCCTTCCACGCAAGCAAA 293272 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | |||||| || |||||| || || || || ||||||||||||| || ||||| Sbjct 293273 GGCGACGATCCTCTCGGCGAAGGTCTCGGAGC------TGTTGATCCACTTGATGGCCCA 293326 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 || ||||| | ||| | |||||||| ||||||||| | |||||| ||| ||| | Sbjct 293327 ATCCGCCTTCCTGGCCACGCACGGCACCGTCTCGATGGCGTGGAAGAGGCGGTGCTTGAC 293386 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 | | |||||||| |||||| |||| ||||| ||| |||| ||||||||||| || Sbjct 293387 CTCTGAGTCCTTGATGTAGGTCTCGAGCAGGAGACTGTACATCTCGGAGTGGATGTTCTC 293446 Query 794640 GATGGCGATCTGGAAGCCATAAAAG 794664 ||| |||||||||||||| || ||| Sbjct 293447 GATTGCGATCTGGAAGCCGTAGAAG 293471 Score = 188 bits (208), Expect = 1e-41 Identities = 182/232 (78%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 |||||||| || |||| ||| ||||||| |||||||| |||||||| |||||||| Sbjct 293477 GGCCTCGGCGACCTGGATCTCGGTCATGAAACGGCCGGCGAGGTTCTCGAGGACGATGCC 293536 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 |||| ||||||||| |||||||||| ||| ||| ||||| ||||||| | | | Sbjct 293537 GTCGGAGGCGGCGAAGAAGGCGAGGATGTGAGAGATGAAGTGGGTCTCGTCGGGGGTTAA 293596 Query 796269 CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 | |||||||| ||||| | ||| |||||||||||||||||||| |||||||| Sbjct 293597 GGCTTCCCAGTGGCGGGTGTCCTGGGAGAGATCGACCTCCTCGGCGGTCCAGAAGGAGGC 293656 Query 796329 CTCGGCCTTTTTGTACATCTCCC--ATATCCGTTGGTAGCGGATGGGGAACA 796378 ||||||||| ||||||||||||| || |||| |||| |||||||||||| Sbjct 293657 CTCGGCCTTCTTGTACATCTCCCAGATTTCCG--GGTACTGGATGGGGAACA 293706 >seq1970 Length=306724 Score = 87.8 bits (96), Expect = 3e-11 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671 |||| || ||| ||||||||||||| | ||| | || || ||||| | |||||||| Sbjct 225573 AGGTTGATCAAGCCACCCTCTTTGATCTCATCTTGGCTGCAAACTATTTGAACATCAAGA 225514 Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731 | | || || || ||| |||| || || || | |||||||| || | || |||| Sbjct 225513 GCTTGCTGGACCTGACTTGCCAGACAGTTGCAGACATGATCAAGGGAAAAACTCCAGAGG 225454 Query 2035732 ACATCCGCAAGACCTTTAACATCAAG 2035757 | ||||||||||| || ||||||||| Sbjct 225453 AGATCCGCAAGACATTCAACATCAAG 225428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914511750033773