Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq596 93.3 3e-14 seq347 91.5 1e-13 seq1128 86.0 5e-12 >seq596 Length=631412 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || ||||| |||| || || || || ||| | || |||| | Sbjct 343174 AATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTGGAGGTGGAGTCCTC 343233 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || ||| |||||| || || |||||| | || ||| || Sbjct 343234 GGACACCATTGACAACGTGAAAGCAAAGATCCAAGACAAGGAAGGCATCCCGCCGGACCA 343293 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| | || || | || || |||||||| || |||| | || |||| |||||||| Sbjct 343294 GCAACGCCTCATCTTCGCCGGAAAACAGCTCGAAGACGGTAGGACTTTGGCCGACTACAA 343353 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 ||| || |||||||| ||| | || |||||||||| ||| |||| ||| Sbjct 343354 CATCCAGAAGGAGTCGACGCTCCATCTGGTGTTGAGGTTGAGAGGAGGA 343402 >seq347 Length=438793 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||||||||| || || |||||||| ||| | || ||| | Sbjct 270135 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAAACCATCACCCTTGAGGTTGAGAGTTCG 270076 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | |||||| ||||||| || || ||||| | || | |||||| Sbjct 270075 GACACCATTGAAAATGTAAAAGCAAAGATTCAGGACAAGGAAGGGATTCCACTAGATCAG 270016 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| || || ||||||||||| | || | || || || || Sbjct 270015 CAGAGGTTGATCTTTGCAGGGAAGCAGCTGGAGGATGGGCGCACTCTTGCAGATTATAAT 269956 Query 107736 ATTCAAAAGGAGTCTACGTTGCA 107758 ||||| ||||||||||| |||| Sbjct 269955 ATTCAGAAGGAGTCTACTCTGCA 269933 >seq1128 Length=278557 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || ||||| || |||||| | || ||| || Sbjct 246587 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACGATTACCCTGGAGGTTGAGAGCAGC 246646 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||| || || || ||||| | || ||| ||| Sbjct 246647 GACACCATCGACAACGTCAAGGCAAAAATCCAGGACAAGGAAGGGATCCCACCGGACCAG 246706 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || ||||| ||||||| || | || ||||||||| Sbjct 246707 CAGAGGCTCATCTTTGCAGGGAAGCAGCTAGAGGACGGGCGCACCCTTGCAGACTACAAC 246766 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || ||||||||||| | ||| ||||| || | |||| || || Sbjct 246767 ATCCAGAAGGAGTCTACACTCCACCTGGTGCTGCGTCTGCGTGGTGG 246813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398797526601523