Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1118 150 1e-31 seq347 147 2e-30 seq4739 122 7e-23 seq1128 91.5 1e-13 >seq1118 Length=308725 Score = 150 bits (166), Expect = 1e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||| | || || ||||| || || ||||| || ||||||||||||||||| || Sbjct 111323 TCCACCCCTGAGTCGTAGGACCAAGTGGAGGGTGGACTCCTTTTGAATGTTATAATCAGC 111382 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || ||||| ||| || |||||||| ||||| | |||| ||||| || || || || Sbjct 111383 AAGAGTGCGGCCATCTTCAAGTTGTTTACCAGCGAAGATCAGCCTTTGTTGGTCTGGAGG 111442 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || ||||| || | || |||||| | || | |||||||| || || Sbjct 111443 GATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAAC 111502 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| ||||||||||| | |||||| ||||| |||||||| Sbjct 111503 CTCGAGAGTTATGGTTTTGCCAGTGAGGGTTTTCACAAAAATCTGCAT 111550 Score = 136 bits (150), Expect = 3e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||| | ||||| ||||||||||| || ||||| || || |||| ||||| Sbjct 110879 ACGGAGCACGAGGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCC 110938 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || |||||||| ||| | || | || || || || || || |||||||| || Sbjct 110939 ATCTTCAAGCTGTTTGCCTGCAAAAATAAGCCTCTGTTGGTCTGGGGGGATACCCTCCTT 110998 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| |||| || ||| | || | || |||||| ||| || || | ||| | Sbjct 110999 GTCTTG-AATCTTTGCCTTCACATTATCAATCGTATCAGAACTTTCAACCTCTAAAGTGA 111057 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||||||||| | |||||| ||||| || ||||| Sbjct 111058 TTGTTTTGCCAGTGAGGGTTTTCACAAAGATTTGCAT 111094 Score = 122 bits (134), Expect = 7e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || | ||| || || || || || || || |||||||| |||| || || | Sbjct 110652 CGAAGAACAAGATGCAGAGTAGACTCCTTCTGGATATTATAATCTGCAAGAGTACGCCCA 110711 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || ||| | ||||| || ||||| || || || || || || ||| Sbjct 110712 TCCTCCAGCTGCTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGTGGGATCCCTTCCTTG 110771 Query 29692 TCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| |||| || ||| | || | ||||| ||| || || |||||||| || Sbjct 110772 TCCTG-AATCTTTGACTTAACATTATCAATGGTGTCCGAACTCTCAACCTCAAGAGTGAT 110830 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||| ||||| || ||||||||||| |||||||| Sbjct 110831 AGTTTTTCCAGTCAAAGTTTTAACAAAAATCTGCAT 110866 >seq347 Length=438793 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||||| ||||| |||||||||||||| ||||| || || |||| ||||| Sbjct 270148 ACGGAGCACCAGGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGCAAGAGTGCGGCC 270207 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || |||||||| ||| | || | || ||||| || || || ||||| || || Sbjct 270208 ATCTTCAAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTGGTCTGGAGGGATACCTTCCTT 270267 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||| || ||| | || || ||||||||| ||| || || | ||| || Sbjct 270268 GTCTTGGATCTTTGCCTTAACATTATCAACCGTGTCAGAACTTTCAACCTCTAAAGTGAT 270327 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | |||||| ||||| || ||||| Sbjct 270328 TGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 270363 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||| | ||||| ||||| || || ||||| || ||||| ||||||||||| || Sbjct 270592 TCCACCCCTGAGCCGCAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTATAATCAGC 270651 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || ||||| || || ||||| || || || | ||||| |||||||| || || || Sbjct 270652 AAGAGTGCGGCCGTCTTCAAGTTGCTTACCGGCGAAGATCAACCTTTGCTGGTCTGGAGG 270711 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || ||||| || | || |||||| | || | |||||||| || || Sbjct 270712 GATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGCTCTCAAC 270771 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||||||||| | |||||| ||||| |||||||| Sbjct 270772 CTCGAGAGTGATGGTTTTGCCAGTGAGGGTTTTTACAAAGATCTGCAT 270819 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | ||| || ||||| || || ||||| || || || |||||||| || ||| Sbjct 270821 CCACCCCTGAGACGGAGAACCAAGTGGAGTGTGGACTCCTTCTGGATGTTATAGTCAGCA 270880 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || ||||| |||||| | || | ||||||||||| || || Sbjct 270881 AGAGTGCGGCCATCCTCAAGCTGTTTACCAGCAAAGATAAGCCTTTGCTGATCTGGTGGG 270940 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| || || || | || |||||| | || || |||||||| ||| || Sbjct 270941 ATCCCCTCCTTATCCTGGATCTTGGCCTTGACATTGTCAACTGTGTCAGAGCTTTCGACC 271000 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || |||||||| | ||||| ||||| |||||||| Sbjct 271001 TCAAGGGTGATGGTCTTGCCAGTGAGAGTTTTTACAAAGATCTGCAT 271047 >seq4739 Length=93234 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||| ||||| || || || || |||||||||||||| |||| | ||| ||| ||| Sbjct 55218 ACCAAGTGAAGTGTTGACTCCTTCTGAATGTTATAATCAGCAAGAATACGACCATCTTCG 55159 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 || || || | ||| | || | || ||||| ||||| || |||||||| || || || Sbjct 55158 AGCTGCTTACTGGCAAAGATAAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTATCCTGG 55099 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | ||| || ||| | || | ||| |||||| || || || | ||| || ||||| Sbjct 55098 ATCTTTGCCTTCACATTGTCAATAGTTTCAGAACTCTCAACATCCAAAGTGATGGTTTTA 55039 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| | |||||| ||||| ||||||||| Sbjct 55038 CCAGTAAGGGTTTTCACAAAGATCTGCATT 55009 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/215 (70%), Gaps = 7/215 (3%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 ||||| | || ||||||| || | | || |||||||| || | |||| ||| Sbjct 55904 AGCACAAGGTGTGGCGTGGACTCCT---GGATATTATAATCTGCCAGAGTGCACCCATCC 55848 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || || ||| ||| | ||||| || ||||||||||| ||| | ||||| ||||| Sbjct 55847 TCCAGCTGCTTGATGGCAAAGATCAACCTCTGCTGATCCGGAGGATTCCCCTCGTTGTCC 55788 Query 29695 TGTAATTTTTG---TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || ||| || | ||| ||| | || ||||| || || |||||| || ||||| || Sbjct 55787 TG-AATCTTAGCCTTTTTACATTGTCAACAGTATCCGAGCTTTCTACCTCCAGAGTGATG 55729 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || | | ||||| || ||||| |||||||| Sbjct 55728 GTCTTCACCATCAAGGTCTTCACAAAAATCTGCAT 55694 >seq1128 Length=278557 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 |||||| || | ||||| || || || || |||||||| ||||| |||| ||| | Sbjct 247030 ACGCAGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCC 246971 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || |||||| | ||||| || ||||| ||||| || || || || || Sbjct 246970 ATCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGAGGGATCCCTTCCTT 246911 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || ||| || | || || | || | ||||| || || || || | || | Sbjct 246910 GTCCTG-AATCTTCGCCTTCACGTTATCGATGGTGTCCGAGGACTCCACCTCCAAGGTGA 246852 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || ||||| || | ||| || || ||||||||||| Sbjct 246851 TGGTCTTGCCTGTGAGGGTCTTCACGAATATCTGCAT 246815 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||||||||||| || || || || || || || ||||| || || ||| Sbjct 246813 CCACCACGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCA 246754 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || || || || || ||| | || | || ||||| ||||| || Sbjct 246753 AGGGTGCGCCCGTCCTCTAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCCGGTGGG 246694 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | |||| ||||| | || | ||||| || || Sbjct 246693 ATCCCTTCCTTGTCCTGGATTTTTGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCAACC 246634 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || | ||| || ||||| |||||||| Sbjct 246633 TCCAGGGTAATCGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 246587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385142640934287