Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq2265 407 2e-108 seq6543 109 7e-19 seq2257 109 7e-19 seq1633 109 7e-19 seq1746 107 2e-18 seq186 100 3e-16 >seq2265 Length=185284 Score = 407 bits (450), Expect = 2e-108 Identities = 592/834 (71%), Gaps = 3/834 (0%) Strand=Plus/Plus Query 179119 ACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 179178 || || || || || || ||| || || | | | |||||| | | |||| |||||| Sbjct 94232 ACCGCCGCAGTTTCTACTCCTACTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGT 94291 Query 179179 CCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTG 179238 ||||| | || || |||| || ||||| ||| | || || || |||| ||| || Sbjct 94292 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 94351 Query 179239 GCTCTCCACGGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG- 179297 ||||| ||||| | |||| ||||| || |||||||| ||||| |||||||| || || Sbjct 94352 GCTCTACACGGCACTTTCGGACTAATAGGTTTCATGCTACGTCAATTTGAACTTGCTCGA 94411 Query 179298 TCTCATCGGTATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGT 179357 | | || || || ||||| ||||| || | || ||| ||| ||||| || || || Sbjct 94412 TTTGTTCA--ATTCGACCTTATAATGCAATCACATTCTCTGTTCCAATTGCAGTTTTTGT 94469 Query 179358 TAGTGTATTTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGG 179417 | |||||| || || || ||||| || || || |||||||||||||||| ||||| Sbjct 94470 TTCTGTATTCCTGATTTATCCACTGGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGG 94529 Query 179418 TGTTGCGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAA 179477 ||| || || || ||| ||||| | || || || ||||| || || || |||||| | || Sbjct 94530 TGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 94589 Query 179478 CCCCTTTCACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCA 179537 || ||||| || |||||||||| ||| | |||| | |||||| || | |||||||| Sbjct 94590 TCCATTTCATATAATGGGAGTTGACGGTGTATTGGGCGCTGCTCTTCTATGCGCTATTCA 94649 Query 179538 TGGAGTAACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGC 179597 ||| | ||||| || ||||| || | ||||||||| || ||||| ||||| | || Sbjct 94650 TGGTGCTACTGTGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCTATGC 94709 Query 179598 GTTCGACTCTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTC 179657 || || | || |||| | || || ||||| ||||| || || ||||| |||||||| Sbjct 94710 TTTTAACCCAACTCAAGCTAAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTC 94769 Query 179658 GCAGATCTTCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGT 179717 || || || ||| || | ||| |||||| |||||||| || ||||||| | | ||||| Sbjct 94770 CCAAATATTTGGGATTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 94829 Query 179718 TCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCG 179777 || || | ||| | ||| | || | || | | || || ||||| || || || Sbjct 94830 ACCAGTAACCGGTTTATGGATGAGCGCTCTCGGAGTAGTCGGTCTGGCTCTGAACCTACG 94889 Query 179778 TGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTT 179837 ||| ||||| || || ||| || || | ||||| ||||||| || || ||||| || Sbjct 94890 TGCCTATGACTTCGTTTCTCAGGAAATTCGTGCAGCGAAAGATCCCGAATTTGAGACTTT 94949 Query 179838 CTATACAAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCA 179897 ||| || || || ||||| | || ||||| | ||| ||||| |||| || ||||| Sbjct 94950 CTACACCAAAAATATTCTATTAAACGAAGGTATTCGTCCTTGGATGGCGACTCAAGATCA 95009 Query 179898 ACCACATGAAAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 || ||||||||| | || ||||| || || || || || |||| ||||| || Sbjct 95010 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTGCCCCGTGGAAACGCTCT 95063 >seq6543 Length=70685 Score = 109 bits (120), Expect = 7e-19 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 |||||| | ||||| ||||| | || || || || || ||||| || || || ||||| Sbjct 60138 TACATCTTAGATGCAGCTGAGAATGCTGGAATCGAGCTGCCCTATTCTTGCCGAGCTGGG 60197 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 || || || |||||||| ||||| | || ||| || || || |||||||| || Sbjct 60198 GCTTGCTCCACCTGTGCCGGTAAGATGGTATCAGGTACAGTGGACCAGTCTGATGGTTCC 60257 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 |||||||||||| | ||||| || || | | ||||||| || ||||||| || Sbjct 60258 TTCCTTGATGATAATCAAATGAAAGAGGGTTACCTGCTGACTTGTGTTTCATACCCAACT 60317 Query 138718 TCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACTGA 138762 || |||||| | ||| | ||| | || || | ||||| || ||| Sbjct 60318 TCAGATTGTGTGATTCACACTCACAAGGAAGGTGAACTTTATTGA 60362 >seq2257 Length=219887 Score = 109 bits (120), Expect = 7e-19 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 |||||| | ||||| ||||| | || || || || || ||||| || || || ||||| Sbjct 145927 TACATCTTAGATGCAGCTGAGAATGCTGGAATCGAGCTGCCCTATTCTTGCCGAGCTGGG 145868 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 || || || |||||||| ||||| | || ||| || || || |||||||| || Sbjct 145867 GCTTGCTCCACCTGTGCCGGTAAGATGGTATCAGGTACAGTGGACCAGTCTGATGGTTCC 145808 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 |||||||||||| | ||||| || || | | ||||||| || ||||||| || Sbjct 145807 TTCCTTGATGATAATCAAATGAAAGAGGGTTACCTGCTGACTTGTGTTTCATACCCAACT 145748 Query 138718 TCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACTGA 138762 || |||||| | ||| | ||| | || || | ||||| || ||| Sbjct 145747 TCAGATTGTGTGATTCACACTCACAAGGAAGGTGAACTTTATTGA 145703 >seq1633 Length=412253 Score = 109 bits (120), Expect = 7e-19 Identities = 249/372 (67%), Gaps = 2/372 (1%) Strand=Plus/Minus Query 177585 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 177644 |||| || || ||| ||||| || || ||||||| || ||| | ||| | |||||| Sbjct 238520 AACCATCTTTACATCGAATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACTGCAACT 238461 Query 177645 ATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCCCCCCGTGGACATCGACGGCATCCGTGA 177703 |||| || || ||| || | ||| |||| | | || || ||||| || ||||| Sbjct 238460 -TCTGTATTTATTATCGTTGTCATTGCTACTCCTTCAATAGATATTGACGGTATTCGTGA 238402 Query 177704 ACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATC 177763 ||| || | | || || | ||||| |||| || || |||||||| || | || | Sbjct 238401 ACCTGTTTCCAGGTCTCTATTTTATGGAAACAGTATTATTTCTGGTGCCATTATTCCTAC 238342 Query 177764 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTG 177823 ||| || || ||| | | ||| || || | || ||||| || || ||| ||| || Sbjct 238341 TTCTGTAGCTATAGGTTTGCGCTTTTACCCGAGATGAGAAGCGGCGTCCGTTGCTGAATG 238282 Query 177824 GCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGC 177883 | | || || || |||||| | | || | || | || || | | ||| | | Sbjct 238281 GTTATACAATGGCAGTCCTTACGAGCTAATTGTTCTACATTTGTTACTTGGCGTAGCTTG 238222 Query 177884 ATATATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGT 177943 || ||||| ||| ||||||||||| | |||| | ||||||||||| ||||| ||| Sbjct 238221 TTACATGGGCCGTAAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGT 238162 Query 177944 TGCATACTCTGC 177955 |||||| || || Sbjct 238161 TGCATATTCAGC 238150 >seq1746 Length=218889 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 |||||||| ||||| ||||| | ||||| || || || ||||| || || | || || Sbjct 200930 TACATCCTAGATGCAGCTGAGAATGCAGGAATCGAGCTGCCCTATTCATGCAGAGCCGGG 200871 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 ||||| ||||||||||| || | | || ||| | || || |||||||| || Sbjct 200870 GCATGCTCTACCTGTGCCGGCATGATGGTATCAGGTTCAGTGGACCAGTCTGATGGTTCC 200811 Query 138658 TTCCTTGATGATGACCAAATTGCAGCA-GGATTTATCATGACTTGCGTAGCATACCCCAC 138716 ||||||||||| | |||| || || | || | | |||||||| | ||||||| || Sbjct 200810 TTCCTTGATGACAATCAAA-TGAAGGAGGGGTACCTGCTGACTTGCATTTCATACCCAAC 200752 Query 138717 ATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACTGATG 138764 || |||||| | ||| | ||| | || || | ||||| |||||||| Sbjct 200751 TTCAGATTGTGTGATTCACACTCACAAGGAAGGTGAACTTTACTGATG 200704 >seq186 Length=888771 Score = 100 bits (110), Expect = 3e-16 Identities = 121/163 (74%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 138517 TTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTT 138576 ||||| || |||||||| ||||||||||| |||||| || |||||||| ||| Sbjct 708089 TTTGAGTGCCCTGATGATGTCTACATCCTTGACCATGCTGAGGAGATTGGTATTGACCTT 708148 Query 138577 CCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACT 138636 || ||||| || | |||||| | || ||| | ||||| || ||| |||| || || || Sbjct 708149 CCATACTCATGCAGGGCTGGTTCTTGCTCTTCATGTGCAGGGAAAGTAGTGGAGGGGTCT 708208 Query 138637 GTAGATCAGTCTGA--CCAGTCTTTCCTTGATGATGACCAAAT 138677 || ||||||||||| ||| |||||||| ||||| || || Sbjct 708209 GTTGATCAGTCTGATGGCAG--CTTCCTTGAAGATGAGCAGAT 708249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605543742312120