Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq1118 82.4 7e-11 seq347 82.4 7e-11 >seq1118 Length=308725 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 137196 ACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCG 137254 ||| | ||| || |||| ||| ||||| ||||| ||||| || || || |||| || Sbjct 111791 ACGGAGAACCAAGTGAAGTGTGGATTCCTTTTGGATGTTATAGTCAGCCAGAGTGCGTCC 111850 Query 137255 AGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTT 137314 | || || || |||||||||||| ||||||| | |||||| || || || || || || | Sbjct 111851 A-TCCTCAAGCTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGTGGGATCCCCTCCT 111909 Query 137315 TGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCA 137374 |||| || || || | | || | ||||| | | ||| || |||| || | Sbjct 111910 TGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTTTCGACCTCAAGGGTGA 111969 Query 137375 CCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| || || | |||||||| || || ||||| Sbjct 111970 TGGTCTTTCCAGTGAGAGTTTTTACAAAGATCTGCAT 112006 >seq347 Length=438793 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| || ||||||||||| |||||||| || | |||| ||||| || ||| Sbjct 270161 TGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGCAAGAGTGCGGCCATCTTCAAGCTGT 270220 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 || || ||| |||| || | ||||| || ||||| || ||||| ||||| || ||| Sbjct 270221 TTGCCTGCAAAGATAAGCCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGGATCTTT 270280 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 || | | || |||||||| | ||| || || | ||| | |||||||| || Sbjct 270281 GCCTTAACATTATCAACCGTGTCAGAACTTTCAACCTCTAAAGTGATTGTCTTGCCAGTA 270340 Query 137389 AATGTTTTTACGAATATTTGCAT 137411 | ||||| || || |||||||| Sbjct 270341 AGGGTTTTCACAAAGATTTGCAT 270363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488444416412400