Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq347 163 6e-35 seq1118 154 3e-32 seq4739 143 5e-29 seq181 134 3e-26 seq596 132 9e-26 seq1128 129 1e-24 >seq347 Length=438793 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||| ||||||||||||| ||| ||||| || || ||||| || || | Sbjct 270365 CCCCCCCTCAGACGAAGAACTAAGTGCAAAGTGGATTCCTTTTGGATATTGTAGTCCGCA 270424 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || ||||| || ||||| || | || || || || ||||| Sbjct 270425 AGGGTACGGCCATCTTCAAGCTGTTTACCTGCAAAAATCAACCTCTGCTGGTCGGGAGGG 270484 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || || ||||| || || ||||| ||||| |||||| | ||| ||| Sbjct 270485 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTATCAGAACTTTCAACT 270544 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| || |||||||| || | ||||| ||||| || |||||| Sbjct 270545 TCCAAAGTGATAGTCTTGCCAGTAAGAGTCTTCACAAAGATTTGCATT 270592 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || | || || ||||| | ||||||||||| || ||||| ||||||||||| | Sbjct 269908 ACCACCACGCAGGCGAAGAACAAGATGCAGAGTAGACTCCTTCTGAATATTATAATCTGC 269967 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| | | || || || || || || || |||||||| | || || |||||| | || Sbjct 269968 AAGAGTGCGCCCATCCTCCAGCTGCTTCCCTGCAAAGATCAACCTCTGCTGATCTAGTGG 270027 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| || |||||||||||||||||||||||||| || || | || || Sbjct 270028 AATCCCTTCCTTGTCCTGAATCTTTGCTTTTACATTTTCAATGGTGTCCGAACTCTCAAC 270087 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || || || ||||| || || ||||| |||||||| Sbjct 270088 CTCAAGGGTGATGGTTTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 270135 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | ||| ||||| ||||| || || || || ||||| || ||||| |||| Sbjct 270821 CCACCCCTGAGACGGAGAACCAAGTGGAGTGTGGACTCCTTCTGGATGTTATAGTCAGCA 270880 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || || || || ||||| ||||||||||| || ||||| |||||||| || Sbjct 270881 AGAGTGCGGCCATCCTCAAGCTGTTTACCAGCAAAGATAAGCCTTTGCTGATCTGGTGGG 270940 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || |||||||| || ||||| || || ||||| |||| || ||| ||| || Sbjct 270941 ATCCCCTCCTTATCCTGGATCTTGGCCTTGACATTGTCAACTGTGTCAGAGCTTTCGACC 271000 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| || | || |||||||| |||||||| Sbjct 271001 TCAAGGGTGATGGTCTTGCCAGTGAGAGTTTTTACAAAGATCTGCAT 271047 >seq1118 Length=308725 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | ||| ||||| ||||||| ||| ||||| || || ||||| || || | Sbjct 111096 CCACCCCTAAGACGAAGAACCAAGTGCAAAGTGGATTCCTTTTGGATATTGTAGTCTGCA 111155 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || ||||| || ||||| || | || || || || || || Sbjct 111156 AGAGTGCGGCCATCTTCAAGCTGTTTACCTGCAAAAATCAACCTCTGCTGGTCGGGTGGG 111215 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || || ||||| || || ||||| ||||| |||||| | ||| || Sbjct 111216 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTATCAGAACTTTCAACC 111275 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| || |||||||| || | ||||| |||||||| |||||| Sbjct 111276 TCCAAAGTGATAGTCTTGCCGGTAAGAGTCTTCACAAATATTTGCATT 111323 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | ||| || || ||||||||||| || || || || | Sbjct 110866 TACCACCGCGGAGACGGAGCACGAGGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGG 110925 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | || ||||| || ||||| || ||||| || || || ||||| ||||| | Sbjct 110926 CAAGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCAAAAATAAGCCTCTGTTGGTCTGGGG 110985 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| |||||||||||||| || ||||| |||||||||||| | ||| | Sbjct 110986 GGATACCCTCCTTGTCTTGAATCTTTGCCTTCACATTATCAATCGTATCAGAACTTTCAA 111045 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || ||||| || || ||||| || | || || ||||| || ||||| Sbjct 111046 CCTCTAAAGTGATTGTTTTGCCAGTGAGGGTTTTCACAAAGATTTGCAT 111094 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | ||| ||||| ||||| || || ||||| || || || ||||| |||| Sbjct 111780 CCACCCCTGAGACGGAGAACCAAGTGAAGTGTGGATTCCTTTTGGATGTTATAGTCAGCC 111839 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || || || || ||||| ||||||||||| || ||||| || ||||| || Sbjct 111840 AGAGTGCGTCCATCCTCAAGCTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGTGGG 111899 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || ||||| ||||| || ||| ||| || Sbjct 111900 ATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTTTCGACC 111959 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||| || || | || |||||||| |||||||| Sbjct 111960 TCAAGGGTGATGGTCTTTCCAGTGAGAGTTTTTACAAAGATCTGCAT 112006 Score = 132 bits (146), Expect = 9e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || | || || ||||| | ||||||||||| || ||||| ||||||||||| | Sbjct 110639 ACCACCACGCAGGCGAAGAACAAGATGCAGAGTAGACTCCTTCTGGATATTATAATCTGC 110698 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| | | || || || || || || || |||||||| | || || || ||||| || Sbjct 110699 AAGAGTACGCCCATCCTCCAGCTGCTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGTGG 110758 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| || |||||||||| || ||||| ||||| || || | || || Sbjct 110759 GATCCCTTCCTTGTCCTGAATCTTTGACTTAACATTATCAATGGTGTCCGAACTCTCAAC 110818 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || || || || ||||| || || ||||| |||||||| Sbjct 110819 CTCAAGAGTGATAGTTTTTCCAGTCAAAGTTTTAACAAAAATCTGCAT 110866 >seq4739 Length=93234 Score = 143 bits (158), Expect = 5e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | || || || || || || || || |||||||| ||||| || || | Sbjct 55008 CCACCTCTAAGTCGAAGGACCAAATGGAGGGTGGACTCTTTCTGGATATTGTAGTCTGCC 54949 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| ||| || || | |||||||| | ||||||||| || || || ||||||||||| Sbjct 54948 AGAGTTCGGCCATCCTTAAGTTGTTTGCTAGCAAAGATGAGCCTCTGCTGATCTGGAGGG 54889 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCT-AC 82762 || |||||||| ||||| ||||| | ||| ||||| ||||| |||||| || || | || Sbjct 54888 ATCCCTTCCTTGTCTTGGATCTTAGATTTCACATTCTCAATGGTATCA-GAGCTTTTAAC 54830 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || ||||| || ||| |||| ||||| ||||| || Sbjct 54829 CTCAAAAGTGATAGTCTTACCCATCAGACTCTTCACAAACATCTGAAT 54782 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 ||||| ||||| || || |||| || || ||||| ||||||| ||| | ||| | | Sbjct 55677 AGAACAAAGTGGAGGGTCTATTCCTTTTGGATATTGTAATCAGCAAGAGTAGGACCATTT 55618 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 | || || ||||||| ||| || ||||| || |||||||| || || |||||||||||| Sbjct 55617 GCAAGCTGCTTTCCAGTAAATATGAGTCTCTGCTGATCTGGTGGAATGCCTTCCTTATCT 55558 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || || || || || ||||| | ||| || ||| | || || || || || || || Sbjct 55557 TGGATTTTGGCCTTCACATTGTTAATAGTGTCAAAACTCTCCACCTCTAATGTGATGGTT 55498 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || | ||||| ||||| ||||| || Sbjct 55497 TTCCCAGTAAGGGTCTTGACAAAAATCTGTAT 55466 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 82625 CTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAG 82684 ||| ||||||||||| | ||| | | || || || || || || |||||||| | Sbjct 55881 CTGGATATTATAATCTGCCAGAGTGCACCCATCCTCCAGCTGCTTGATGGCAAAGATCAA 55822 Query 82685 TCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGC--TTTTACATTTTCA 82742 || || ||||| ||||| | || || || || |||||||| || ||||||||| ||| Sbjct 55821 CCTCTGCTGATCCGGAGGATTCCCCTCGTTGTCCTGAATCTTAGCCTTTTTACATTGTCA 55762 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAAT 82802 | ||||| |||||| |||| ||| || ||||| | |||| ||||| ||||| Sbjct 55761 ACAGTATCCGAGCTTTCTACCTCCAGAGTGATGGTCTTCACCATCAAGGTCTTCACAAAA 55702 Query 82803 ATCTGCAT 82810 |||||||| Sbjct 55701 ATCTGCAT 55694 >seq181 Length=541317 Score = 134 bits (148), Expect = 3e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || || ||||| || || || || | ||| | | ||| Sbjct 240868 CGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTCCGGCCG 240809 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| |||||||||||||| ||||| || | |||||| ||||| || || |||||||| Sbjct 240808 TCTTCAAGTTGTTTTCCAGCGAAGATGAGGCGTTGTTGGTCTGGTGGGATGCCTTCCTTG 240749 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG-TTCTACTTCCAAAGTTAT 82774 ||||| || ||||| || || || || || ||||| | ||| ||| || || | ||||| Sbjct 240748 TCTTGGATTTTTGCCTTCACGTTGTCGATGGTATC-TGAGGATTCGACCTCTAGGGTTAT 240690 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || || | || || || || |||||||| Sbjct 240689 CGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 240654 >seq596 Length=631412 Score = 132 bits (146), Expect = 9e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||||||| | || || | || || || || || ||||| || || || || | Sbjct 343401 CCTCCTCTCAACCTCAACACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 343342 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||||||||||| || |||||||| || ||||| || | ||| || || || || Sbjct 343341 AAAGTCCTACCGTCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGGG 343282 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||| ||||||||||| || || ||||| || || | || || Sbjct 343281 ATGCCTTCCTTGTCTTGGATCTTTGCTTTCACGTTGTCAATGGTGTCCGAGGACTCCACC 343222 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| || |||||||| || || | || || || || ||||||||| Sbjct 343221 TCCAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATT 343174 >seq1128 Length=278557 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || | ||| || ||||| || ||||| || || ||||||| || | || || Sbjct 247030 ACGCAGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCC 246971 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || | || || ||||||||||| | || || || || ||||| || |||||||| Sbjct 246970 ATCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGAGGGATCCCTTCCTT 246911 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || |||||||| || || || || || || || || | || || ||||| || || Sbjct 246910 GTCCTGAATCTTCGCCTTCACGTTATCGATGGTGTCCGAGGACTCCACCTCCAAGGTGAT 246851 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||||| | ||||| || ||||||||||| Sbjct 246850 GGTCTTGCCTGTGAGGGTCTTCACGAATATCTGCAT 246815 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || | ||| || ||||| || ||||| || || || || | Sbjct 246813 CCACCACGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCA 246754 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| ||||| || || || |||||||| || || || || || || || Sbjct 246753 AGGGTGCGCCCGTCCTCTAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCCGGTGGG 246694 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || || ||||| || || || || || || || | || || Sbjct 246693 ATCCCTTCCTTGTCCTGGATTTTTGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCAACC 246634 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || ||||||||||| || | ||||| ||||| |||||||| Sbjct 246633 TCCAGGGTAATCGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 246587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981622063468073