Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq596 102 5e-17 seq1128 91.5 1e-13 seq347 91.5 1e-13 seq335 89.7 3e-13 seq1118 87.8 1e-12 seq181 84.2 1e-11 >seq596 Length=631412 Score = 102 bits (112), Expect = 5e-17 Identities = 167/237 (70%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||||||| | ||||||| ||| || || ||| || || |||||||| |||| Sbjct 343401 CCTCCTCTCAACCTCAACACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 343342 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || | |||| || | ||||||||||| || || | || ||||| || |||| Sbjct 343341 AAAGTCCTACCGTCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGGG 343282 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || || || | ||| | |||||| || ||||| Sbjct 343281 ATGCCTTCCTTGTCTTGGATCTT-TGCTTTCACGTTGTCAATGGTGTCCGAGGACTCCAC 343223 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGT 33758 || | |||||||| || || |||| ||||| || ||||||||||| | |||||| Sbjct 343222 CTCCAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTG-TGGTGT 343167 >seq1128 Length=278557 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||| ||| ||||| |||| || | || Sbjct 246333 TGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 246274 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 |||||||| || || | ||||||||| || | || | ||||| ||||| || || Sbjct 246273 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGGATCCCTTCCTTGTCCTGGATCTTG 246214 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || ||| | ||| | ||||||||| ||||| || | ||||| || || || || Sbjct 246213 GCCTT-AACGTTGTCGATGGTGTCGCTGCTCTCCACCTCGAGGGTGATGGTCTTGCCGGT 246155 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 || || || || ||||||||||| Sbjct 246154 CAAAGTCTTCACGAAGATCTGCAT 246131 >seq347 Length=438793 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | || | ||||| || || ||| ||| ||||| ||||| ||||| | Sbjct 270593 CCACCCCTGAGCCGCAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCA 270652 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | ||| || ||||| || ||||| | ||||| ||| | || Sbjct 270653 AGAGTGCGGCCGTCTTCAAGTTGCTTACCGGCGAAGATCAACCTTTGCTGGTCTGGAGGG 270712 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | ||||| ||||| || || || | ||| ||| | |||||| ||| || Sbjct 270713 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CATTGTCGATGGTGTCAGAGCTC---TC 270768 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| ||||| || || | |||||||||||||||||||| Sbjct 270769 AACCTCGAGAGTGATGGTTTTGCCAGTGAGGGTTTTTACAAAGATCTGCAT 270819 >seq335 Length=478728 Score = 89.7 bits (98), Expect = 3e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 ||||||| || || || ||| ||||| || ||||| || | || || || | || Sbjct 394857 AACACCAGGTGAAGTGTCGACTCCTTTTGGATATTGTAGTCAGCAAGGGTTCGGCCATCT 394798 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 |||||||||||||| ||||||||||| | ||||||||| | || | |||||||||||| Sbjct 394797 TCCAATTGTTTTCCAGCAAAAATCAATCTCTGCTGATCAGGAGGGATACCTTCTTTGTC 394739 >seq1118 Length=308725 Score = 87.8 bits (96), Expect = 1e-12 Identities = 168/243 (69%), Gaps = 10/243 (4%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| || ||||| | ||||| || || ||| ||| || || ||| Sbjct 111540 AAAATCTGCATGCCACCCCTTAAACGGAGAACCAAGTGCAGTGTGGACTCCTTCTGGATG 111599 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 || || || | || ||||| | || || | ||| || || || || |||| | ||| Sbjct 111600 TTATAGTCAGCAAGAGTGCGGCCATCTTCAAGTTGCTTACCAGCGAAGATCAGCCTTTGC 111659 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || ||| | || | || || ||||| || || |||| ||| ||| | |||||| Sbjct 111660 TGGTCTGGTGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCA-CATTGTCGATGGTGTC 111718 Query 33690 ---GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTG 33746 |||| || || |||| |||||| || || || || | ||||||||||||||||| Sbjct 111719 AGAGCTT---TCAACCTCAAGCGTGATGGTCTTGCCAGTGAGAGTTTTTACAAAGATCTG 111775 Query 33747 CAT 33749 ||| Sbjct 111776 CAT 111778 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | ||| | ||||| || || ||| || ||||| ||||| || || | Sbjct 111780 CCACCCCTGAGACGGAGAACCAAGTGAAGTGTGGATTCCTTTTGGATGTTATAGTCAGCC 111839 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || || | ||||| || ||||| |||| | ||||| ||| | || Sbjct 111840 AGAGTGCGTCCATCCTCAAGCTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGTGGG 111899 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTC---GCTTGATTC 33698 | || || ||||| || || || | ||| |||| |||||| |||| || Sbjct 111900 ATCCCCTCCTTGTCCTGGATCTTGGCCTTGA-CATTGTCAATGGTGTCAGAGCTT---TC 111955 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || || || || | |||||||||||||||||||| Sbjct 111956 GACCTCAAGGGTGATGGTCTTTCCAGTGAGAGTTTTTACAAAGATCTGCAT 112006 >seq181 Length=541317 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| ||| || || |||| || | ||||||||| || || Sbjct 240845 CTCCTTCTGGATGTTGTAGTCGGCGAGAGTCCGGCCGTCTTCAAGTTGTTTTCCAGCGAA 240786 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | || || || ||| | || | ||||| ||||| ||||| |||| | | Sbjct 240785 GATGAGGCGTTGTTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATTTTTGCCTTCA-CGT 240727 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||| || ||||| || || | || ||||| || || |||| ||||| | Sbjct 240726 TGTCGATGGTATCTGAGGATTCGACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCA 240667 Query 33737 CAAAGATCTGCATAGTTG 33754 | ||||||||||| |||| Sbjct 240666 CGAAGATCTGCATGGTTG 240649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328638672853440