Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq596 134 3e-26 seq1128 132 1e-25 seq1118 125 2e-23 seq347 120 7e-22 seq4739 116 9e-21 >seq596 Length=631412 Score = 134 bits (148), Expect = 3e-26 Identities = 152/201 (76%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || |||||||| |||| ||||| || ||||| | || Sbjct 343190 AAAACCCTAACGGGGAAGACGATCACCCTGGAGGTGGAGTCCTCGGACACCATTGACAAC 343249 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || |||||||| ||| ||||| || ||||| || ||||||| ||| | || ||||| Sbjct 343250 GTGAAAGCAAA-GATCCAAGACAAGGAAGGCATCCCGCCGGACCAGCAACGCCTCATCTT 343308 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||| ||| | ||||| || |||||||||||||| |||||| ||||||| ||||| Sbjct 343309 CGCCGGAAAACAGCTCGAAGACGGTAGGACTTTGGCCGACTACAACATCCAGAAGGAGTC 343368 Query 206364 TACTCTTCACCTTGTTTTGAG 206384 || || || || || ||||| Sbjct 343369 GACGCTCCATCTGGTGTTGAG 343389 Score = 96.9 bits (106), Expect = 8e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 204758 CTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCA 204817 ||||| || || || || || ||||| ||||||| || ||||| ||||||||||| || Sbjct 343389 CTCAACACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTCCTACCG 343330 Query 204818 TCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||| ||||| |||||||||||||| || ||||| || Sbjct 343329 TCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGCTG 343292 >seq1128 Length=278557 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| || || |||||||| || || ||||| ||||| ||||| || ||| Sbjct 246818 CAGATATTCGTGAAGACCCTCACAGGCAAGACCATCACCTTGGAGGTGGAGTCCTCGGAC 246877 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || ||||| || |||||| || Sbjct 246878 ACCATCGATAACGTGAAGGCGAAGATTCAGGACAAGGAAGGGATCCCTCCGGACCAGCAG 246937 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| || || ||||||||||| ||||||||||| | || ||||||||| | Sbjct 246938 AGGTTGATCTTTGCTGGGAAGCAGTTGGAGGATGGAAGGACCCTTGCTGATTACAACATT 246997 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||| ||||||||||| Sbjct 246998 CAGAAGGAGTCTACCCTTCACCTTGT 247023 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| | || || || || ||| Sbjct 246362 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGAGCAGCGAC 246421 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || ||||| || ||||| || Sbjct 246422 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCGGATCAGCAG 246481 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| |||||||||||||||||| | || || || | ||| | |||||||| ||| || Sbjct 246482 AGACTCATCTTCGCCGGAAAGCAGCTCGAGGACGGTCGTACTCTCGCCGATTATAACATC 246541 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| || || || || ||||| ||| Sbjct 246542 CAGAAGGAATCAACCCTCCACCTGGTT 246568 >seq1118 Length=308725 Score = 125 bits (138), Expect = 2e-23 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| |||||||| || || ||||||||||| || | || Sbjct 111079 AAAACCCTCACTGGCAAAACAATCACTTTAGAGGTTGAAAGTTCTGATACGATTGATAAT 111020 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||||||| || || || || || ||| || || ||||| || Sbjct 111019 GTGAAGGCAAAGATTCAAGACAAGGAGGGTATCCCCCCAGACCAACAGAGGCTTATTTTT 110960 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||| | |||||||| | ||| | ||||| |||||| |||||||||| || Sbjct 110959 GCAGGCAAACAGCTTGAAGATGGCCGCACTCTTGCCGACTACAACATCCAGAAAGAATCC 110900 Query 206365 ACTCTTCACCTTGT 206378 || |||||||| || Sbjct 110899 ACCCTTCACCTCGT 110886 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | || |||||||| |||||| | || || || ||||| ||| Sbjct 110863 CAGATTTTTGTTAAAACTTTGACTGGAAAAACTATCACTCTTGAGGTTGAGAGTTCGGAC 110804 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||||||| || || ||||| || || ||| || Sbjct 110803 ACCATTGATAATGTTAAGTCAAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAGCAG 110744 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| || || |||||| |||| ||||| | ||| | || ||||| || || Sbjct 110743 AGGTTGATCTTTGCGGGGAAGCAGCTGGAGGATGGGCGTACTCTTGCAGATTATAATATC 110684 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| ||||||||||| || |||||| Sbjct 110683 CAGAAGGAGTCTACTCTGCATCTTGTT 110657 >seq347 Length=438793 Score = 120 bits (132), Expect = 7e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || |||||||| || || |||||||||||||| || || Sbjct 270348 AAAACCCTTACTGGCAAGACAATCACTTTAGAGGTTGAAAGTTCTGACACGGTTGATAAT 270289 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| ||||| || ||||| || || ||| || || |||||||| Sbjct 270288 GTTAAGGCAAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAGCAGAGGCTTATCTTT 270229 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||| | |||||||| | ||| | || || |||||| |||| ||||| || Sbjct 270228 GCAGGCAAACAGCTTGAAGATGGCCGCACTCTTGCTGACTACAACATCCAAAAAGAATCC 270169 Query 206365 ACTCTTCACCTTGT 206378 || |||||||| || Sbjct 270168 ACCCTTCACCTGGT 270155 Score = 107 bits (118), Expect = 5e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| | || |||||||| ||||| | || || || ||||| ||| Sbjct 270132 CAGATTTTTGTCAAAACTTTGACTGGAAAAACCATCACCCTTGAGGTTGAGAGTTCGGAC 270073 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| ||||| ||||||||| || || ||||| ||| | || || Sbjct 270072 ACCATTGAAAATGTAAAAGCAAAGATTCAGGACAAGGAAGGGATTCCACTAGATCAGCAG 270013 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| || || |||||| |||| ||||| | ||| | || ||||| || | Sbjct 270012 AGGTTGATCTTTGCAGGGAAGCAGCTGGAGGATGGGCGCACTCTTGCAGATTATAATATT 269953 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| ||||||||||| || |||||| Sbjct 269952 CAGAAGGAGTCTACTCTGCATCTTGTT 269926 Score = 102 bits (112), Expect = 2e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| ||||| || ||||| |||||| | || || || || |||||| Sbjct 270816 CAGATCTTTGTAAAAACCCTCACTGGCAAAACCATCACTCTCGAGGTTGAGAGCTCTGAC 270757 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || ||||| || || ||| ||| Sbjct 270756 ACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCAGACCAGCAA 270697 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||||||||| ||||| | ||||| || | ||| | || ||||| ||| || Sbjct 270696 AGGTTGATCTTCGCCGGTAAGCAACTTGAAGACGGCCGCACTCTTGCTGATTATAACATC 270637 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || || ||||| || || ||| Sbjct 270636 CAAAAGGAGTCCACCCTCCAC 270616 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| ||||| || || || ||||| | || || ||||| |||||| Sbjct 271044 CAGATCTTTGTAAAAACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAAAGCTCTGAC 270985 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||||| || || ||| ||||| || || || || || || || || ||| Sbjct 270984 ACAGTTGACAATGTCAAGGCCAAGATCCAGGATAAGGAGGGGATCCCACCAGATCAGCAA 270925 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || |||||||| || || || ||| | || ||||| | ||| | || || || ||| || Sbjct 270924 AGGCTTATCTTTGCTGGTAAACAGCTTGAGGATGGCCGCACTCTTGCTGACTATAACATC 270865 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| ||||| || || ||| | ||| Sbjct 270864 CAGAAGGAGTCCACACTCCACTTGGTT 270838 >seq4739 Length=93234 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || ||||| ||||||||||| || || |||||||| Sbjct 55013 CAGATCTTTGTGAAAACCCTTACTGGTAAAACCATCACTTTGGATGTTGAGAGTTCTGAA 55072 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||| || || || || || || |||||| || Sbjct 55073 ACTATTGACAATGTGAAGGCAAAGATCCAGGATAAGGAGGGTATCCCACCGGACCAGCAG 55132 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || |||||||| ||| | |||||| | |||||||| | | | | || ||||| ||| | Sbjct 55133 AGGCTTATCTTTGCCAGTAAGCAGCTCGAAGATGGTCGTATTCTTGCTGATTATAACATT 55192 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTT 206381 ||||| ||||| || |||||| | ||||| Sbjct 55193 CAGAAGGAGTCAACACTTCACTTGGTTTT 55221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181573878117747