Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq1633 131 5e-26 seq402 87.8 5e-13 >seq1633 Length=412253 Score = 131 bits (144), Expect = 5e-26 Identities = 269/395 (68%), Gaps = 4/395 (1%) Strand=Plus/Minus Query 18731 ACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTC 18790 |||| ||||||| || || |||| |||||| |||| |||||||| ||||||| | Sbjct 238540 ACTGTATAACCAGCACTGAAAACCATCTTTACATCGAATGGTTTGGTGTTTTGATGATCC 238481 Query 18791 CGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGTA 18849 | | | | | || ||| | ||| || ||||| | |||||||| | ||| | || Sbjct 238480 CTACTTTATTGACTGCAACT-TCTGTATTTATTATCGTTGTCATTGCTACTCCTTCAATA 238422 Query 18850 GACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATA 18909 || ||||| || || || || |||||| | | ||| |||||||||||| || || Sbjct 238421 GATATTGACGGTATTCGTGAACCTGTTTCCAGGTCTCTATTTTATGGAAACAGTATTATT 238362 Query 18910 TCGGGAGCCGTCGTTCCGAGCAGCAAT-GCCATCGGACTACACTTCTACCCAATTTGGGA 18968 || || ||| | |||| | | | | || || || | | ||| ||||| | || || Sbjct 238361 TCTGGTGCCATTATTCCTA-CTTCTGTAGCTATAGGTTTGCGCTTTTACCCGAGATGAGA 238303 Query 18969 AGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCA 19028 ||| || ||| ||||||| | ||||| || | || | | | || | || | || Sbjct 238302 AGCGGCGTCCGTTGCTGAATGGTTATACAATGGCAGTCCTTACGAGCTAATTGTTCTACA 238243 Query 19029 CTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGG 19088 || | ||||||| | ||||||||| || ||||||||||||| | || | || Sbjct 238242 TTTGTTACTTGGCGTAGCTTGTTACATGGGCCGTAAGTGGGAACTTAGTTTCCGTTTGGG 238183 Query 19089 GATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTC 19123 ||||||||||||||| |||||| || ||||||| Sbjct 238182 TATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 238148 >seq402 Length=581868 Score = 87.8 bits (96), Expect = 5e-13 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 19606 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTA 19665 |||||||| ||| |||| |||||||| ||| | || ||||||||| || | | || Sbjct 365480 GGTCGTGTAATTAATACATGGGCTGATATTATTAACTTTGCTAACCTGGGTATGGTAGTT 365421 Query 19666 ATGCACGAACGTAATGCTCATAACTTCCCACTTGATTT 19703 ||||| ||||||||||||||||||||||| || || || Sbjct 365420 ATGCATGAACGTAATGCTCATAACTTCCCTCTAGACTT 365383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141121467152406