Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq339 381 8e-100 >seq339 Length=880584 Score = 381 bits (422), Expect = 8e-100 Identities = 454/604 (75%), Gaps = 15/604 (2%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCT-GCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 |||||||| || || | | |||||| |||| || | |||||||||||| |||| | Sbjct 293743 GAGCCGCTTCTCGCCCCA-AACCCGGACCGTTTCTGCATGTTCCCCATCCAGTACCCGGA 293685 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 || ||||| |||||| || ||||||||||||||||| |||||||||||||||||||| | Sbjct 293684 AATCTGGGAGATGTAC-AAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGGTCGATC 293626 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894 || | ||||| |||||||| | | | | ||||||| ||| |||||| | Sbjct 293625 TCTCCCAGGACACCCGCCACTGGGAAGCCTTAACCCCCGACGAGACCCACTTCATCTCTC 293566 Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954 || |||||||||| || ||||||| ||| |||||||| ||||||||| |||||||| Sbjct 293565 ACATCCTCGCCTTCTT-CGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGGCCGT 293507 Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014 || |||| ||| |||| | | ||||| || || ||||| ||||||||||| ||| Sbjct 293506 TTCATGACCGAGATCCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCAATC 293447 Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074 || ||||||||||| || | ||| |||||| |||| |||||| |||||||| | | Sbjct 293446 GAGAACATCCACTCCGAGATGTACAGTCTCCTGCTCGAGACCTACATCAAGGACTCAGAG 293387 Query 1456075 GAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGAC 1456134 | ||| ||| |||||| | ||||||||| |||||||||| ||| | ||||| || Sbjct 293386 GTCAAGCACCGCCTCTTCCACGCCATCGAGACGGTGCCGTGCGTGGCCAGGAAGGCGGAT 293327 Query 1456135 TGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCT 1456194 ||||| || |||||||||||| || || ||| ||| |||||| || |||||| || Sbjct 293326 TGGGCCATCAAGTGGATCAAC----AGCTCCGAGAC-CTTCGCCGAGAGGATCGTCGCCT 293272 Query 1456195 TTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGA 1456253 |||| |||| || || ||||| ||||| || || |||||| |||| |||||||| |||| Sbjct 293271 TTGCTTGCGTGGAAGGGATCTTCTTCTCCGGGAGCTTCTGCTCCATATTTTGGCTGAAGA 293212 Query 1456254 AGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATT--TATCAGTCGCGACGAAG 1456311 |||| || |||||||| || | || ||| |||||| || | ||| || ||||||| Sbjct 293211 AGCGGGGTCTCATGCCAGGAC-TCACCTTCTCCAACGAGTTGGTGTCA--CGTGACGAAG 293155 Query 1456312 TTTT 1456315 ||| Sbjct 293154 GTTT 293151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176238359877734