Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq596 134 1e-26 seq1128 123 2e-23 seq1118 114 1e-20 seq4739 109 5e-19 seq347 109 5e-19 >seq596 Length=631412 Score = 134 bits (148), Expect = 1e-26 Identities = 165/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 35519 AACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGC 35578 ||||||||||||| ||| | ||| |||||| || |||||||| |||||||| || | Sbjct 343392 AACCTCAACACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTCCTA 343333 Query 35579 TCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCC 35638 |||| || ||||| || || || || || | || |||||||||| || | || ||| Sbjct 343332 CCGTCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGGGATGCCTTCC 343273 Query 35639 TTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGT 35697 ||||| |||| ||||||| |||| | | ||||| || |||||||||| || Sbjct 343272 TTGTCTTGGATC-TTTGCTTTCACGTTGTCAATGGTGTCCGAGGACTCCACCTCCAGGGT 343214 Query 35698 GATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 |||||| || ||||| | |||||||| || ||||||||| || Sbjct 343213 GATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTGTG 343171 >seq1128 Length=278557 Score = 123 bits (136), Expect = 2e-23 Identities = 149/199 (75%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||||| | ||| || |||| || |||||||| || || || Sbjct 246322 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 246263 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||||| ||| | | ||||||||| |||| || || | | || Sbjct 246262 GATGAGACGCTGCTGGTCCGGAGGGATCCCTTCCTTGTCCTGGATC-TTGGCCTTAACGT 246204 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||||| |||||||| | ||||| || || || |||||||| |||| Sbjct 246203 TGTCGATGGTGTCGCTGCTCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTCA 246144 Query 35724 CAAATATCTGCATTCTGTG 35742 | || ||||||| |||||| Sbjct 246143 CGAAGATCTGCA-TCTGTG 246126 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| || | ||| |||||| || |||||||| || || Sbjct 246813 CCACCACGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCA 246754 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| ||| |||| || |||||||| || ||||| || | || ||||||||||| || Sbjct 246753 AGGGTGCGCCCGTCCTCTAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCCGGTGGG 246694 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | ||||||||| ||| |||||| | |||| | | |||||||| || || Sbjct 246693 ATCCCTTCCTTGTCCTGGAT-TTTTGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCAAC 246635 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| || ||||| || || || | || || ||||| |||||||| Sbjct 246634 CTCCAGGGTAATCGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 246587 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| |||||||||||||| || | ||| | | || |||| |||||| || ||||| Sbjct 247006 CTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCCTCCAACTGCTTCCCAGCAAA 246947 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||||| ||| | | ||||||||| ||||| ||||| | Sbjct 246946 GATCAACCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCCTGAATCTTCGCCTTCACGTT 246887 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || |||||||||| ||||| || || || || | || ||||| Sbjct 246886 ATCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTGCCTGTGAGGGTCTTCAC 246827 Query 35725 AAATATCTGCAT 35736 ||||||||||| Sbjct 246826 GAATATCTGCAT 246815 >seq1118 Length=308725 Score = 114 bits (126), Expect = 1e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || || ||||| || | || ||| | || ||||||||||| |||||||| Sbjct 110675 CTCCTTCTGGATATTATAATCTGCAAGAGTACGCCCATCCTCCAGCTGCTTCCCCGCAAA 110734 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | || | | ||||||||| |||||| ||| | | | Sbjct 110735 GATCAACCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATCTTTGACTTAACATT 110794 Query 35665 TGCCACCGTGTCGCTCGA---TTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||||| ||| || ||||| | ||||| ||||| || ||||||||||| Sbjct 110795 ATCAATGGTGTC---CGAACTCTCAACCTCAAGAGTGATAGTTTTTCCAGTCAAAGTTTT 110851 Query 35722 CACAAATATCTGCAT 35736 ||||| |||||||| Sbjct 110852 AACAAAAATCTGCAT 110866 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || || || |||||||| || ||||| || || | || || | || || Sbjct 111114 ACCAAGTGCAAAGTGGATTCCTTTTGGATATTGTAGTCTGCAAGAGTGCGGCCATCTTCA 111173 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 ||||| ||||| ||||| ||||||| ||||||||| | || | | ||||||||| | Sbjct 111174 AGCTGTTTACCTGCAAAAATCAACCTCTGCTGGTCGGGTGGGATTCCTTCCTTGTCCTGG 111233 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| ||| | | | | | || || ||| ||||||| ||||| || || Sbjct 111234 ATCTTGGCCTTGACATTGTCAATGGTATCAGAACTTTCAACCTCCAAAGTGATAGTCTTG 111293 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || | ||| ||||||||||| ||||||| Sbjct 111294 CCGGTAAGAGTCTTCACAAATATTTGCATTC 111324 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||||||||| ||||| || | || || | || || || || ||||| || || Sbjct 111359 CTCCTTTTGAATGTTATAATCAGCAAGAGTGCGGCCATCTTCAAGTTGTTTACCAGCGAA 111418 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || || ||||| | ||| | || ||||||||| |||||| ||| | | | Sbjct 111419 GATCAGCCTTTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 111478 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||||| |||| || ||||| | || || ||||| || || | ||||| Sbjct 111479 GTCAATGGTGTCAGAGCTC---TCAACCTCGAGAGTTATGGTTTTGCCAGTGAGGGTTTT 111535 Query 35722 CACAAATATCTGCAT 35736 |||||| |||||||| Sbjct 111536 CACAAAAATCTGCAT 111550 >seq4739 Length=93234 Score = 109 bits (120), Expect = 5e-19 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| || | || |||||| |||||||| ||||| || Sbjct 55236 CCACCACGGAGGCGAAAAACCAAGTGAAGTGTTGACTCCTTCTGAATGTTATAATCAGCA 55177 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | | || | || || |||||||||| ||||| || | || ||||||||||| || Sbjct 55176 AGAATACGACCATCTTCGAGCTGCTTACTGGCAAAGATAAGCCTCTGCTGGTCCGGTGGG 55117 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | | |||||| ||| ||||||| ||||| | | | | || || ||| || Sbjct 55116 ATACCCTCCTTATCCTGGATCTTTGCCTTCACATTGTCAATAGTTTCAGAACTC---TCA 55060 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || |||| ||||| |||||||| || | ||||||||||| |||||||||| Sbjct 55059 ACATCCAAAGTGATGGTTTTACCAGTAAGGGTTTTCACAAAGATCTGCATTC 55008 >seq347 Length=438793 Score = 109 bits (120), Expect = 5e-19 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||| || ||||| || | || ||| | || ||||||||||| || ||||| Sbjct 269944 CTCCTTCTGAATATTATAATCTGCAAGAGTGCGCCCATCCTCCAGCTGCTTCCCTGCAAA 270003 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| |||||| || |||| | ||||||||| |||||| || | | | Sbjct 270004 GATCAACCTCTGCTGATCTAGTGGAATCCCTTCCTTGTCCTGAATCTTTGCTTTTACATT 270063 Query 35665 TGCCACCGTGTCGCTCGA---TTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | | ||||| ||| || ||||| | ||||| ||||| || ||||||||||| Sbjct 270064 TTCAATGGTGTC---CGAACTCTCAACCTCAAGGGTGATGGTTTTTCCAGTCAAAGTTTT 270120 Query 35722 CACAAATATCTGCAT 35736 ||||| |||||||| Sbjct 270121 GACAAAAATCTGCAT 270135 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || ||||| |||||||| || || | || || | || || ||||| || || ||||| Sbjct 270173 TCTTTTTGGATGTTGTAGTCAGCAAGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCAAAG 270232 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | || ||||||||| | ||| | | |||||||| ||||||| ||| | | | Sbjct 270233 ATAAGCCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGGATCTTTGCCTTAACATTA 270292 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | |||||||| ||| ||||| | ||||| || || || || | ||||||||| Sbjct 270293 TCAACCGTGTCAGAACTTTCAACCTCTAAAGTGATTGTCTTGCCAGTAAGGGTTTTCACA 270352 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 270353 AAGATTTGCAT 270363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450701711359560