Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq2265 531 6e-146 seq1633 140 4e-28 seq6680 91.5 2e-13 >seq2265 Length=185284 Score = 531 bits (588), Expect = 6e-146 Identities = 622/836 (74%), Gaps = 7/836 (1%) Strand=Plus/Plus Query 159559 ACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 159618 || || || || || || ||| || || | | | |||||| | | |||| |||||| Sbjct 94232 ACCGCCGCAGTTTCTACTCCTACTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGT 94291 Query 159619 CCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTT 159678 ||||| | ||||| || || || ||||| ||| | || || | ||| | |||||| Sbjct 94292 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 94351 Query 159679 GCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCGT 159738 ||||| ||||| | |||| || |||||||| |||||||| ||||||||| ||||||| Sbjct 94352 GCTCTACACGGCACTTTCGGACTAATAGGTTTCATGCTACGTCAATTTGAACTTGCTCGA 94411 Query 159739 CTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTC 159798 | ||| || || ||||| ||||| || | ||||||| ||| ||||| |||||||| Sbjct 94412 TTTGTTCA-ATTCGACCTTATAATGCAATCACATTCTCTGTTCCAATTGCAGTTTTTGTT 94470 Query 159799 AGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGG 159858 |||||||| || |||||||||||||||||| ||||||||||| |||||||| || Sbjct 94471 TCTGTATTCCTGATTTATCCACTGGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 94530 Query 159859 GTAGCAGCAATCTTTAGAT---TCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTC 159915 |||||||| || ||| ||| |||| || |||| ||||||| || || ||||| | Sbjct 94531 GTAGCAGCTATATTTCGATTCATCCTCTTTTTCC--AAGGGTTT-CATAATTGGACATTG 94587 Query 159916 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATC 159975 || || || ||||| |||||||||| ||| || | || | || || | || || || Sbjct 94588 AATCCATTTCATATAATGGGAGTTGACGGTGTATTGGGCGCTGCTCTTCTATGCGCTATT 94647 Query 159976 CATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAAG 160035 |||||||||||||| || || || || ||||||||||| || ||||| ||||| | Sbjct 94648 CATGGTGCTACTGTGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCTAT 94707 Query 160036 GCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 160095 || ||| | || ||||||| |||| |||||||| ||||||||||| |||||||| ||| Sbjct 94708 GCTTTTAACCCAACTCAAGCTAAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGG 94767 Query 160096 TCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTT 160155 || || || || || |||| ||||| || || || ||| | ||||| || ||||| ||| Sbjct 94768 TCCCAAATATTTGGGATTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 94827 Query 160156 GTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCTT 160215 || || || | ||| |||||| | || | || | | ||||| ||| | ||||| Sbjct 94828 GTACCAGTAACCGGTTTATGGATGAGCGCTCTCGGAGTAGTCGGTCTGGCTCTGAACCTA 94887 Query 160216 CGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGACC 160275 ||||| || || ||||| |||||| ||| | ||||| ||||||| ||||||||||| Sbjct 94888 CGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGCAGCGAAAGATCCCGAATTTGAGACT 94947 Query 160276 TTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGAT 160335 ||||||||||| || || ||||| || ||||| ||||| |||||||||| || ||| Sbjct 94948 TTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGTCCTTGGATGGCGACTCAAGAT 95007 Query 160336 CAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACT 160391 || || ||||||||| |||| ||||||||||| || || || | || ||||| || Sbjct 95008 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTGCCCCGTGGAAACGCTCT 95063 >seq1633 Length=412253 Score = 140 bits (154), Expect = 4e-28 Identities = 246/356 (69%), Gaps = 2/356 (1%) Strand=Plus/Minus Query 157721 TGGTTCGGTGTACTGATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGC 157779 ||||| ||||| ||||||| ||||| || | |||||||| ||||| || || ||| Sbjct 238502 TGGTTTGGTGTTTTGATGATCCCTACTTTATTGACTGCAACT-TCTGTATTTATTATCGT 238444 Query 157780 CTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACT 157839 || | ||| |||| | | || |||||||| || || ||||| ||| | | || || Sbjct 238443 TGTCATTGCTACTCCTTCAATAGATATTGACGGTATTCGTGAACCTGTTTCCAGGTCTCT 238384 Query 157840 CATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCT 157899 | ||||| |||| || || |||||||| || |||||| ||| || || ||| | Sbjct 238383 ATTTTATGGAAACAGTATTATTTCTGGTGCCATTATTCCTACTTCTGTAGCTATAGGTTT 238324 Query 157900 CCACTTCTACCCCATCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCC 157959 | ||| ||||| | || ||||| || || ||| || ||| | || || || |||| Sbjct 238323 GCGCTTTTACCCGAGATGAGAAGCGGCGTCCGTTGCTGAATGGTTATACAATGGCAGTCC 238264 Query 157960 TTTCCAACTTGTAGTATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTG 158019 || | | || | || | || || | | ||| | | || ||||| ||| |||| Sbjct 238263 TTACGAGCTAATTGTTCTACATTTGTTACTTGGCGTAGCTTGTTACATGGGCCGTAAGTG 238204 Query 158020 GGAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTC 158075 |||||| || |||||| ||||||||||| ||||| ||| |||||||| |||| Sbjct 238203 GGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 238148 >seq6680 Length=52110 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 160000 TTGTTTGAAGATGGAGAACAAGCAAACACATTTAAGGCGTTTGAGCCTACTCAAGAAGAA 160059 || ||||||||||| || ||||| ||||| || ||| | || ||||||| ||| Sbjct 10914 TTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAA 10855 Query 160060 GAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCATTT 160119 || |||||||| ||||||||||| |||| ||| ||| |||| ||||| || ||| || Sbjct 10854 GAAACTTATTCAATGGTCACTGCTAACCACTTTTGGCCGCAAATCTTTGGGGTTTATTTC 10795 Query 160120 TCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGT 160157 | || | | ||| | | ||| || ||||| ||||| Sbjct 10794 TTCAATATTCATTGGTTACGTTTCTTTATGTTATTTGT 10757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572907196220400