Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq2265 432 4e-116 seq6543 138 1e-27 seq2257 138 1e-27 seq1633 122 1e-22 seq1746 102 9e-17 >seq2265 Length=185284 Score = 432 bits (478), Expect = 4e-116 Identities = 580/803 (72%), Gaps = 3/803 (0%) Strand=Plus/Plus Query 161904 CATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCA 161962 |||||| || || || || ||||||||||| || ||||| ||||| || ||| || Sbjct 94268 CATTCT-TTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCA 94326 Query 161963 ACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCAT 162022 | | || || || |||| |||||| || || || || | |||| ||||| || ||||| Sbjct 94327 ATTAGGTGGTCTGTGGACTTTTGTTGCTCTACACGGCACTTTCGGACTAATAGGTTTCAT 94386 Query 162023 GCTCCGTCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCCTACAATGCTATTGCGTT 162082 ||| ||||| |||||||| || || || || || || || || ||||| || | || Sbjct 94387 GCTACGTCAATTTGAACTTGCTCGATTTGTTCA-ATTCGACCTTATAATGCAATCACATT 94445 Query 162083 CTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAG 162142 ||||| ||| ||||| |||||||| || ||||| || || ||| |||||||||| | Sbjct 94446 CTCTGTTCCAATTGCAGTTTTTGTTTCTGTATTCCTGATTTATCCACTGGGTCAGTCTGG 94505 Query 162143 TTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCA 162202 |||||| || || || ||||| || ||||| || ||| ||||| | | ||| | || Sbjct 94506 TTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCA 94565 Query 162203 AGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGG 162262 ||| || ||||| ||||| |||| || || ||||| |||||||||| ||| || | || Sbjct 94566 AGGGTTTCATAATTGGACATTGAATCCATTTCATATAATGGGAGTTGACGGTGTATTGGG 94625 Query 162263 TGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTATACGAGGATGG 162322 | || ||||||| |||||||| || | || || |||||||| |||| || ||||| Sbjct 94626 CGCTGCTCTTCTATGCGCTATTCATGGTGCTACTGTGGAAAATACTTTATTTGAAGATGG 94685 Query 162323 AGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGGAAGAGACTTATTCTAT 162382 || ||||| || || | || ||| | | || || | |||| |||||||| || Sbjct 94686 TGATGGTGCAAATACATTCTATGCTTTTAACCCAACTCAAGCTAAAGAAACTTATTCAAT 94745 Query 162383 GGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTG 162442 ||||||||| |||||||| ||||| || || || || ||||| ||||| || || || || Sbjct 94746 GGTCACTGCTAACCGCTTTTGGTCCCAAATATTTGGGATTGCTTTTTCCAATAAACGTTG 94805 Query 162443 GCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCAT 162502 | | ||||| || ||||| ||||| || || | ||| |||||| | || | || | Sbjct 94806 GTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGCGCTCTCGGAGT 94865 Query 162503 TATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGC 162562 | ||||| ||||| ||||| ||||| || || ||||| |||||| || | ||||| Sbjct 94866 AGTCGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGCAGC 94925 Query 162563 AGAAGATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTGCTCAATGAAGGACTACG 162622 ||||||| || ||||| || |||||||| || || ||||| | || ||||| | || Sbjct 94926 GAAAGATCCCGAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACGAAGGTATTCG 94985 Query 162623 TGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCT 162682 | | ||| | || || || || || ||||| ||| |||| ||||| || || ||||| Sbjct 94986 TCCTTGGATGGCGACTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCT 95045 Query 162683 TCCTAGAGGCAACGCCCTTTAAT 162705 || | || ||||| ||||||| Sbjct 95046 GCCCCGTGGAAACGCTCTTTAAT 95068 >seq6543 Length=70685 Score = 138 bits (152), Expect = 1e-27 Identities = 169/227 (74%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 ||||| ||||||||||| || | || ||| | || | ||||||||| || ||||| Sbjct 60138 TACATCTTAGATGCAGCTGAGAATGCTGGAATCGAGCTGCCCTATTCTTGCCGAGCTGGG 60197 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 |||||||| ||||||| ||||| || | ||||||||||| ||||||||||| ||| Sbjct 60198 GCTTGCTCCACCTGTGCCGGTAAGATGGTATCAGGTACAGTGGACCAGTCTGATGGTTCC 60257 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTACT 161305 ||| | |||||| | || || || || | ||| |||| |||||| |||| || ||| Sbjct 60258 TTCCTTGATGATAATCAAATGAAAGAGGGTTACCTGCTGACTTGTGTTTCATACCCAACT 60317 Query 161306 AGCGATTGTGTGATTCAAACTGAGCAAG--AGGAGAATCTGTACTGA 161350 |||||||||||||| ||| | |||| ||| ||| || || ||| Sbjct 60318 TCAGATTGTGTGATTCACACTCA-CAAGGAAGGTGAA-CTTTATTGA 60362 >seq2257 Length=219887 Score = 138 bits (152), Expect = 1e-27 Identities = 169/227 (74%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 ||||| ||||||||||| || | || ||| | || | ||||||||| || ||||| Sbjct 145927 TACATCTTAGATGCAGCTGAGAATGCTGGAATCGAGCTGCCCTATTCTTGCCGAGCTGGG 145868 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 |||||||| ||||||| ||||| || | ||||||||||| ||||||||||| ||| Sbjct 145867 GCTTGCTCCACCTGTGCCGGTAAGATGGTATCAGGTACAGTGGACCAGTCTGATGGTTCC 145808 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTACT 161305 ||| | |||||| | || || || || | ||| |||| |||||| |||| || ||| Sbjct 145807 TTCCTTGATGATAATCAAATGAAAGAGGGTTACCTGCTGACTTGTGTTTCATACCCAACT 145748 Query 161306 AGCGATTGTGTGATTCAAACTGAGCAAG--AGGAGAATCTGTACTGA 161350 |||||||||||||| ||| | |||| ||| ||| || || ||| Sbjct 145747 TCAGATTGTGTGATTCACACTCA-CAAGGAAGGTGAA-CTTTATTGA 145703 >seq1633 Length=412253 Score = 122 bits (134), Expect = 1e-22 Identities = 253/374 (68%), Gaps = 2/374 (1%) Strand=Plus/Minus Query 159987 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACC 160046 |||| || || ||| ||||| || || ||||||| || ||| | ||| | ||||| Sbjct 238520 AACCATCTTTACATCGAATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACTGCAACT 238461 Query 160047 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 160105 ||||| || || ||| || | ||| |||| | | || || ||||| || ||||| Sbjct 238460 -TCTGTATTTATTATCGTTGTCATTGCTACTCCTTCAATAGATATTGACGGTATTCGTGA 238402 Query 160106 ACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATC 160165 ||| || | | || || | ||||| |||| || || |||||||| || |||| | Sbjct 238401 ACCTGTTTCCAGGTCTCTATTTTATGGAAACAGTATTATTTCTGGTGCCATTATTCCTAC 238342 Query 160166 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTG 160225 ||| || || ||| | | ||| || || | || ||||| || || ||| ||| || Sbjct 238341 TTCTGTAGCTATAGGTTTGCGCTTTTACCCGAGATGAGAAGCGGCGTCCGTTGCTGAATG 238282 Query 160226 GCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTTATCGGCATCTATGC 160285 | | || || || |||||| | | || | || | || || | | ||| | | Sbjct 238281 GTTATACAATGGCAGTCCTTACGAGCTAATTGTTCTACATTTGTTACTTGGCGTAGCTTG 238222 Query 160286 ATATATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGT 160345 || ||||| ||| ||||||||||| | |||||| ||||||||||| ||||| ||| Sbjct 238221 TTACATGGGCCGTAAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGT 238162 Query 160346 AGCATATTCTGCTC 160359 |||||||| |||| Sbjct 238161 TGCATATTCAGCTC 238148 >seq1746 Length=218889 Score = 102 bits (112), Expect = 9e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 ||||| |||||||||| || | |||||| | || | |||||| || | || || Sbjct 200930 TACATCCTAGATGCAGCTGAGAATGCAGGAATCGAGCTGCCCTATTCATGCAGAGCCGGG 200871 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 || |||||| ||||||| || | || | |||||| |||| ||||||||||| ||| Sbjct 200870 GCATGCTCTACCTGTGCCGGCATGATGGTATCAGGTTCAGTGGACCAGTCTGATGGTTCC 200811 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTACT 161305 ||| | ||||| | || || | || | ||| |||| || || |||| || ||| Sbjct 200810 TTCCTTGATGACAATCAAATGAAGGAGGGGTACCTGCTGACTTGCATTTCATACCCAACT 200751 Query 161306 AGCGATTGTGTGATTCAAACTGAGCAAG--AGGAGAATCTGTACTGATG 161352 |||||||||||||| ||| | |||| ||| ||| || |||||||| Sbjct 200750 TCAGATTGTGTGATTCACACTCA-CAAGGAAGGTGAA-CTTTACTGATG 200704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559389952103400