Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq2265 396 3e-105 seq1633 122 1e-22 seq734 86.0 8e-12 >seq2265 Length=185284 Score = 396 bits (438), Expect = 3e-105 Identities = 592/836 (71%), Gaps = 7/836 (1%) Strand=Plus/Plus Query 182541 ACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 182600 || || || || || || ||| || || | | | |||||| | | |||| |||||| Sbjct 94232 ACCGCCGCAGTTTCTACTCCTACTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGT 94291 Query 182601 CCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTG 182660 ||||| | || || |||| || ||||| ||| | || || || |||| ||| || Sbjct 94292 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 94351 Query 182661 GCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC 182720 ||||| ||||| | |||| || || ||||||||||| | ||||||||||||||||| Sbjct 94352 GCTCTACACGGCACTTTCGGACTAATAGGTTTCATGCTACGTCAATTTGAACTTGCTCGA 94411 Query 182721 CTGATTGGAATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTC 182780 | || | || ||||||| ||||| || | || |||| ||| ||||| || || || Sbjct 94412 TTTGTTCAATTC-GACCTTATAATGCAATCACATTCTCTGTTCCAATTGCAGTTTTTGTT 94470 Query 182781 AGTGTGTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGT 182840 ||| ||||| || ||||| |||| ||||| |||||| || ||||| |||||| Sbjct 94471 TCTGTATTCCTGATTTATCCACTGGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 94530 Query 182841 GTCGCGGCGATCTTCAGGTTC---CTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTC 182897 || || || || || | ||| || || |||| |||||||| | || |||||| | Sbjct 94531 GTAGCAGCTATATTTCGATTCATCCTCTTTTTCCA--AGGGTTTC-ATAATTGGACATTG 94587 Query 182898 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATC 182957 || || || ||||| |||||||||| ||| || |||| | || || || | ||||| Sbjct 94588 AATCCATTTCATATAATGGGAGTTGACGGTGTATTGGGCGCTGCTCTTCTATGCGCTATT 94647 Query 182958 CATGGTGTCACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAA 183017 ||||||| || || || ||||| || | ||||||||| || ||||| ||||| | Sbjct 94648 CATGGTGCTACTGTGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCTAT 94707 Query 183018 GCGTTCGATTCCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGG 183077 || || | | ||||| | | || || ||||| ||||| || || || || |||||| Sbjct 94708 GCTTTTAACCCAACTCAAGCTAAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGG 94767 Query 183078 TCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTT 183137 || ||||| || ||| |||| ||| |||||| |||||||| || ||||||||||| ||| Sbjct 94768 TCCCAAATATTTGGGATTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 94827 Query 183138 GTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCTT 183197 || || || | ||| | ||| | || | || | | || || ||||| || || Sbjct 94828 GTACCAGTAACCGGTTTATGGATGAGCGCTCTCGGAGTAGTCGGTCTGGCTCTGAACCTA 94887 Query 183198 CGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACG 183257 ||||| ||||| || || ||| || ||| | ||||| ||||||| || || ||||| Sbjct 94888 CGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGCAGCGAAAGATCCCGAATTTGAGACT 94947 Query 183258 TTCTACACAAAGAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGAT 183317 |||||||| || || || || | || ||||| | ||| ||||| |||| || ||| Sbjct 94948 TTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGTCCTTGGATGGCGACTCAAGAT 95007 Query 183318 CAACCACATGAAAACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373 || || ||||||||| | || |||||||| || ||||| || | || ||||| || Sbjct 95008 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTGCCCCGTGGAAACGCTCT 95063 >seq1633 Length=412253 Score = 122 bits (134), Expect = 1e-22 Identities = 253/374 (68%), Gaps = 2/374 (1%) Strand=Plus/Minus Query 181008 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 181067 |||| || || ||| ||||| || || ||||||| || ||| | ||| | |||||| Sbjct 238520 AACCATCTTTACATCGAATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACTGCAACT 238461 Query 181068 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 181126 ||||| || || ||| || | ||| |||| | | || || ||||| || ||||| Sbjct 238460 -TCTGTATTTATTATCGTTGTCATTGCTACTCCTTCAATAGATATTGACGGTATTCGTGA 238402 Query 181127 ACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATC 181186 ||| || | | || || | ||||| |||| || || |||||||| || |||| | Sbjct 238401 ACCTGTTTCCAGGTCTCTATTTTATGGAAACAGTATTATTTCTGGTGCCATTATTCCTAC 238342 Query 181187 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTG 181246 ||| || || ||| | | ||| || || | || ||||| || || ||| ||| || Sbjct 238341 TTCTGTAGCTATAGGTTTGCGCTTTTACCCGAGATGAGAAGCGGCGTCCGTTGCTGAATG 238282 Query 181247 GCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATTTATGC 181306 | | || || || |||||| | | || | || | || || | | ||| | | Sbjct 238281 GTTATACAATGGCAGTCCTTACGAGCTAATTGTTCTACATTTGTTACTTGGCGTAGCTTG 238222 Query 181307 ATACATGGGACGTGAATGGGAACTCTCTTACCGCTTAGGTATGCGCCCCTGGATCTGTGT 181366 |||||||| ||| | |||||||| || ||| || ||||||||||| ||||| ||| Sbjct 238221 TTACATGGGCCGTAAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGT 238162 Query 181367 TGCATACTCTGCTC 181380 |||||| || |||| Sbjct 238161 TGCATATTCAGCTC 238148 >seq734 Length=848177 Score = 86.0 bits (94), Expect = 8e-12 Identities = 73/89 (82%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 183063 GCGAATCGTTTTTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCAC 183122 || ||||| ||||||| |||| ||| |||||||| ||| |||||| |||||||| || Sbjct 325249 GCTAATCGCTTTTGGTTCCAAAACTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACAT 325308 Query 183123 TTCTTTATGTTGTTTGTTCCTGTC-ATGG 183150 ||||||||||| ||||| || ||| |||| Sbjct 325309 TTCTTTATGTTATTTGTACCGGTCTATGG 325337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614492317884960