Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq2265 401 8e-107 seq1633 129 7e-25 >seq2265 Length=185284 Score = 401 bits (444), Expect = 8e-107 Identities = 582/821 (71%), Gaps = 7/821 (1%) Strand=Plus/Plus Query 179403 ACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 179462 || || || || || || ||| || || | | | |||||| | | |||| |||||| Sbjct 94232 ACCGCCGCAGTTTCTACTCCTACTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGT 94291 Query 179463 CCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTG 179522 ||||| | || || |||| || ||||| ||| | || || || |||| ||| || Sbjct 94292 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 94351 Query 179523 GCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC 179582 ||||| ||||| | |||| || || ||||||||||| | ||||||||||||||||| Sbjct 94352 GCTCTACACGGCACTTTCGGACTAATAGGTTTCATGCTACGTCAATTTGAACTTGCTCG- 94410 Query 179583 CTGATTGGT---ATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTC 179639 ||| || || ||||||| ||||| || | || |||| ||| ||||| || || Sbjct 94411 ---ATTTGTTCAATTCGACCTTATAATGCAATCACATTCTCTGTTCCAATTGCAGTTTTT 94467 Query 179640 GTCAGTGTTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTT 179699 || ||| ||||| || ||||| |||| ||||| |||||| || ||||| ||| Sbjct 94468 GTTTCTGTATTCCTGATTTATCCACTGGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTT 94527 Query 179700 GGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTC 179759 ||||| || || || || | ||| | || || | || || || || || ||||| | Sbjct 94528 GGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTG 94587 Query 179760 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATC 179819 || || || ||||| |||||||||| ||| || | || | || || || | ||||| Sbjct 94588 AATCCATTTCATATAATGGGAGTTGACGGTGTATTGGGCGCTGCTCTTCTATGCGCTATT 94647 Query 179820 CATGGAGTTACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAG 179879 ||||| | |||||| || ||||| || | ||||||||| || |||||||| || | Sbjct 94648 CATGGTGCTACTGTGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCTAT 94707 Query 179880 GCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 179939 || ||| | | || || | |||| |||||||| ||||||||||| |||||||| ||| Sbjct 94708 GCTTTTAACCCAACTCAAGCTAAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGG 94767 Query 179940 TCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTT 179999 || || || || || ||||| ||||| || || || ||| | ||||| || ||||| ||| Sbjct 94768 TCCCAAATATTTGGGATTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 94827 Query 180000 GTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTT 180059 || || || | ||| |||||| | || | || | | ||||| ||||| ||||| Sbjct 94828 GTACCAGTAACCGGTTTATGGATGAGCGCTCTCGGAGTAGTCGGTCTGGCTCTGAACCTA 94887 Query 180060 CGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACC 180119 ||||| || || ||||| |||||| || | ||||| |||||||||| |||||||| Sbjct 94888 CGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGCAGCGAAAGATCCCGAATTTGAGACT 94947 Query 180120 TTCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGAT 180179 ||||||||||| || ||||| | || ||||| | ||| | ||| |||| | ||| Sbjct 94948 TTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGTCCTTGGATGGCGACTCAAGAT 95007 Query 180180 CAACCACATGAGTCATTCGTATTCCCAGAAGAAGTTCTGCC 180220 || || ||||| | ||||||| || || |||||||| Sbjct 95008 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTGCC 95048 >seq1633 Length=412253 Score = 129 bits (142), Expect = 7e-25 Identities = 258/376 (69%), Gaps = 6/376 (2%) Strand=Plus/Minus Query 177876 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 177935 |||| || || ||| ||||| || || ||||||| || ||| | ||| | |||||| Sbjct 238520 AACCATCTTTACATCGAATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACTGCAACT 238461 Query 177936 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 177994 ||||| || || ||| || | ||| |||| | | || || ||||| || ||||| Sbjct 238460 -TCTGTATTTATTATCGTTGTCATTGCTACTCCTTCAATAGATATTGACGGTATTCGTGA 238402 Query 177995 ACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATC 178054 ||| || | | || || | ||||| |||| || || |||||||| || |||| | Sbjct 238401 ACCTGTTTCCAGGTCTCTATTTTATGGAAACAGTATTATTTCTGGTGCCATTATTCCTAC 238342 Query 178055 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTG 178114 ||| || || ||| | | ||| || || | || ||||| || || ||| ||| || Sbjct 238341 TTCTGTAGCTATAGGTTTGCGCTTTTACCCGAGATGAGAAGCGGCGTCCGTTGCTGAATG 238282 Query 178115 GCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGG--TATCTAT 178172 | | || || || |||||| | | || | || | || || | |||| || || | Sbjct 238281 GTTATACAATGGCAGTCCTTACGAGCTAATTGTTCTACATTTGTTACTTGGCGTAGCT-T 238223 Query 178173 GCATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGT 178232 | |||||||| ||| ||||||||||| | |||||| ||||||||||| ||||| | Sbjct 238222 GT-TACATGGGCCGTAAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCT 238164 Query 178233 GTAGCATACTCTGCTC 178248 || ||||| || |||| Sbjct 238163 GTTGCATATTCAGCTC 238148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605886072518160