Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq2265 408 5e-109 seq1633 105 7e-18 >seq2265 Length=185284 Score = 408 bits (452), Expect = 5e-109 Identities = 576/804 (72%), Gaps = 5/804 (1%) Strand=Plus/Plus Query 160115 CATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCA 160173 |||||| || || || || ||||||||||| || ||||| ||||| | ||| || Sbjct 94268 CATTCT-TTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCA 94326 Query 160174 ACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCAT 160233 | | || || || |||| |||||| || || || || | |||| ||||| || ||||| Sbjct 94327 ATTAGGTGGTCTGTGGACTTTTGTTGCTCTACACGGCACTTTCGGACTAATAGGTTTCAT 94386 Query 160234 GCTCCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGT 160292 ||| ||||| |||||||| || || | | || || || ||||| ||||| || | | Sbjct 94387 GCTACGTCAATTTGAACTTGCTCGATTTGTTCA--ATTCGACCTTATAATGCAATCACAT 94444 Query 160293 TCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCA 160352 |||||| ||| ||||| || ||||| |||||||| || || ||| |||||||||| Sbjct 94445 TCTCTGTTCCAATTGCAGTTTTTGTTTCTGTATTCCTGATTTATCCACTGGGTCAGTCTG 94504 Query 160353 GTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTC 160412 ||||||| || || || ||||| || ||||| || ||| ||||| | | || | | Sbjct 94505 GTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCC 94564 Query 160413 AAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAG 160472 |||| ||||| || ||||| | || || || ||||| |||||||||| ||| || | | Sbjct 94565 AAGGGTTTCATAATTGGACATTGAATCCATTTCATATAATGGGAGTTGACGGTGTATTGG 94624 Query 160473 GAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATG 160532 | | || || || | || || ||||| | |||||| || || || | | |||||||| Sbjct 94625 GCGCTGCTCTTCTATGCGCTATTCATGGTGCTACTGTGGAAAATACTTTATTTGAAGATG 94684 Query 160533 GAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTA 160592 | || |||||||| || | || ||| | | || || | |||| |||||||| | Sbjct 94685 GTGATGGTGCAAATACATTCTATGCTTTTAACCCAACTCAAGCTAAAGAAACTTATTCAA 94744 Query 160593 TGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGT 160652 |||||||||| |||||||| ||||| || || || || ||||| ||||| || || || | Sbjct 94745 TGGTCACTGCTAACCGCTTTTGGTCCCAAATATTTGGGATTGCTTTTTCCAATAAACGTT 94804 Query 160653 GGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCAGTATTGGCA 160712 || | ||||| || ||||| ||||| || || | ||| | |||| | | | || Sbjct 94805 GGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGCGCTCTCGGAG 94864 Query 160713 TTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAG 160772 | | ||||| ||||| || || ||||| || || ||||| ||| || ||| | |||| Sbjct 94865 TAGTCGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGCAG 94924 Query 160773 CAGAAGATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTACTGAATGAAGGACTAC 160832 | ||||||| ||||||||||| ||||||||||| || || ||| | || ||||| | | Sbjct 94925 CGAAAGATCCCGAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACGAAGGTATTC 94984 Query 160833 GTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTC 160892 || | ||| | || || || || || ||||| ||| |||| ||||| || || |||| Sbjct 94985 GTCCTTGGATGGCGACTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTC 95044 Query 160893 TTCCTAGAGGCAACGCCCTTTAAT 160916 | || | || ||||| ||||||| Sbjct 95045 TGCCCCGTGGAAACGCTCTTTAAT 95068 >seq1633 Length=412253 Score = 105 bits (116), Expect = 7e-18 Identities = 248/372 (67%), Gaps = 2/372 (1%) Strand=Plus/Minus Query 158406 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACC 158465 |||| || || ||| ||||| || || ||||||| || ||| | ||| | ||||| Sbjct 238520 AACCATCTTTACATCGAATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACTGCAACT 238461 Query 158466 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 158524 ||||| || || ||| || | ||| |||| | | || || ||||| || ||||| Sbjct 238460 -TCTGTATTTATTATCGTTGTCATTGCTACTCCTTCAATAGATATTGACGGTATTCGTGA 238402 Query 158525 ACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATC 158584 ||| || | | || || | ||||| |||| || || |||||||| || | || | Sbjct 238401 ACCTGTTTCCAGGTCTCTATTTTATGGAAACAGTATTATTTCTGGTGCCATTATTCCTAC 238342 Query 158585 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTG 158644 ||| || || ||| | | ||| || || | || ||||| || || ||| ||| || Sbjct 238341 TTCTGTAGCTATAGGTTTGCGCTTTTACCCGAGATGAGAAGCGGCGTCCGTTGCTGAATG 238282 Query 158645 GCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGC 158704 | | || || || |||||| | | || | || | || || | | ||| | | Sbjct 238281 GTTATACAATGGCAGTCCTTACGAGCTAATTGTTCTACATTTGTTACTTGGCGTAGCTTG 238222 Query 158705 ATATATGGGACGTGAATGGGAACTTTCATACCGCTTAGGTATGCGCCCCTGGATCTGTGT 158764 || ||||| ||| | ||||||||| | ||| || ||||||||||| ||||| ||| Sbjct 238221 TTACATGGGCCGTAAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGT 238162 Query 158765 AGCATATTCTGC 158776 |||||||| || Sbjct 238161 TGCATATTCAGC 238150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552360985162560