Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq2265 441 9e-119 seq1633 127 2e-24 >seq2265 Length=185284 Score = 441 bits (488), Expect = 9e-119 Identities = 575/794 (72%), Gaps = 1/794 (0%) Strand=Plus/Plus Query 180237 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGTGGTGCCAA 180296 |||||| | | |||| ||||||||||| | || || |||| || ||||| ||| Sbjct 94268 CATTCTTTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAA 94327 Query 180297 CTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTTATG 180356 | || || || |||| ||| || ||||| ||||| | |||| ||||| || || ||| Sbjct 94328 TTAGGTGGTCTGTGGACTTTTGTTGCTCTACACGGCACTTTCGGACTAATAGGTTTCATG 94387 Query 180357 CTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTATTGCATTC 180416 ||||| || |||||||| || || || || || || ||||| ||||| || ||||| Sbjct 94388 CTACGTCAATTTGAACTTGCTCGATTTGTTCA-ATTCGACCTTATAATGCAATCACATTC 94446 Query 180417 TCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAGTCCAGT 180476 |||| ||| || || || ||||| ||||| || || || |||||||||||||| || Sbjct 94447 TCTGTTCCAATTGCAGTTTTTGTTTCTGTATTCCTGATTTATCCACTGGGTCAGTCTGGT 94506 Query 180477 TGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTTCTTCAG 180536 ||||||||||| || |||||| |||||||| || ||| ||||| | |||||| | || Sbjct 94507 TGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAA 94566 Query 180537 GGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGT 180596 || || || || ||||| | || || || ||||| |||||||||| ||| || | || Sbjct 94567 GGGTTTCATAATTGGACATTGAATCCATTTCATATAATGGGAGTTGACGGTGTATTGGGC 94626 Query 180597 GGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTATGAAGATGGA 180656 | || | |||| || || ||||| | |||||||| || || | | ||||||||| Sbjct 94627 GCTGCTCTTCTATGCGCTATTCATGGTGCTACTGTGGAAAATACTTTATTTGAAGATGGT 94686 Query 180657 GAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTACTCTATG 180716 || ||||| || || | || ||| | |||| |||| | |||||||| || ||| Sbjct 94687 GATGGTGCAAATACATTCTATGCTTTTAACCCAACTCAAGCTAAAGAAACTTATTCAATG 94746 Query 180717 GTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGG 180776 |||||||| |||||||| ||||| || || || || ||||| ||||| || || || ||| Sbjct 94747 GTCACTGCTAACCGCTTTTGGTCCCAAATATTTGGGATTGCTTTTTCCAATAAACGTTGG 94806 Query 180777 CTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATT 180836 | ||||| || ||||| ||||| || || | ||| |||||| | || | || | Sbjct 94807 TTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGCGCTCTCGGAGTA 94866 Query 180837 ATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCA 180896 | ||||| ||||| ||||| ||||| || || ||||| ||| || || | ||||| Sbjct 94867 GTCGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGCAGCG 94926 Query 180897 GAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGGACTACGT 180956 ||||||| || || ||||| ||||||||||| || || ||||| || ||||| | ||| Sbjct 94927 AAAGATCCCGAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGT 94986 Query 180957 GCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAGAAGTTCTA 181016 | ||| |||| || ||||| || || |||||| | || |||||||| || ||||| Sbjct 94987 CCTTGGATGGCGACTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTG 95046 Query 181017 CCAAGAGGTAACGC 181030 || | || ||||| Sbjct 95047 CCCCGTGGAAACGC 95060 >seq1633 Length=412253 Score = 127 bits (140), Expect = 2e-24 Identities = 242/354 (68%), Gaps = 2/354 (1%) Strand=Plus/Minus Query 178906 TGGTTCGGTGTGCTGATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGC 178964 ||||| ||||| ||||||| ||||| || | |||||||| ||||| || || | | Sbjct 238502 TGGTTTGGTGTTTTGATGATCCCTACTTTATTGACTGCAACT-TCTGTATTTATTATCGT 238444 Query 178965 TTTCGTAGCAGCACCTCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACT 179024 | || | || | ||| | | ||||||||||| || |||||||| || | | || || Sbjct 238443 TGTCATTGCTACTCCTTCAATAGATATTGACGGTATTCGTGAACCTGTTTCCAGGTCTCT 238384 Query 179025 CATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCT 179084 | |||||||||| || || |||||||| || | || | ||| || || ||| | Sbjct 238383 ATTTTATGGAAACAGTATTATTTCTGGTGCCATTATTCCTACTTCTGTAGCTATAGGTTT 238324 Query 179085 ACACTTCTACCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCC 179144 | ||| ||||| | || ||||| || || | | ||| ||| | || || || |||| Sbjct 238323 GCGCTTTTACCCGAGATGAGAAGCGGCGTCCGTTGCTGAATGGTTATACAATGGCAGTCC 238264 Query 179145 TTTCCAACTGGTAGTCTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTG 179204 || | | || | || | || || | | ||| | | || ||||| ||| |||| Sbjct 238263 TTACGAGCTAATTGTTCTACATTTGTTACTTGGCGTAGCTTGTTACATGGGCCGTAAGTG 238204 Query 179205 GGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGC 179258 ||||||| || |||| | |||||||| || ||||| ||||||||| || || Sbjct 238203 GGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGC 238150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610205191940160