Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3231 138 2e-27 seq339 104 3e-17 >seq3231 Length=135437 Score = 138 bits (152), Expect = 2e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| ||||| | || | |||||| | ||| | || | ||||||||||| ||| ||| Sbjct 17993 CCTCCTTGATCCACATAACGGGCAGTATCATTGAACACCCGCAGCATCGGAACAATGCCA 18052 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 ||||| | |||||||||||| ||||||||| || | || ||||| ||| || |||| Sbjct 18053 TTAGAAGTCCCATTTGTTCCACGAATATAACTACCAGTGGCACGAATGTTATGAACAGAT 18112 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| |||||||| || ||| ||| | |||||| ||||| || ||||||||| Sbjct 18113 ACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCTTTCAGAGTATCATATATA 18172 Query 69931 CCCTCTATGCTATCATCTATCATG 69954 || || || || |||||| ||||| Sbjct 18173 CCTTCAATACTGTCATCTTTCATG 18196 Score = 86.0 bits (94), Expect = 9e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| ||||| || | ||||| || || ||||||||||| || ||| | || || | Sbjct 18320 GTTCCAGCATTGAAAAGGGTAGGTGAAGCATGAGTGAACCACCGTTGAGACATCATATGG 18379 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||| ||| | || || ||||| || || ||||| | | || | ||| ||| Sbjct 18380 TATGTTTTGATAACAGAGTCAATATCATCCTTGTGGATTCCAACAGAAACCCTCATTAAC 18439 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 ||||| ||||||| ||||| || | | ||||| ||||| || | || || Sbjct 18440 ATATGTTGAGGTCTCTCTACAACCTTCCCTTGGACCTTCAAGAGGTAGGACCTCTCAAGG 18499 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || |||||| | || || ||||| Sbjct 18500 GTTTTGAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATAGATAAT 18546 >seq339 Length=880584 Score = 104 bits (114), Expect = 3e-17 Identities = 207/302 (69%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 39656 AATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCA 39715 || ||||| || || |||||||| ||||| ||||| ||||| || ||||||||||||| | Sbjct 293172 AACTCGTTGGAGAAGGTGAGTCCTGGCATGAGACCCCGCTTCTTCAGCCAAAATATGG-A 293230 Query 39716 GCAAAAGAT-CCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCC 39774 ||| ||| | || || |||||||| ||||| || ||||| || || | ||||| | Sbjct 293231 GCAGAAGCTCCCGGAGAAGAAGATCCCTTCCACGCAAGCAAAGGCGACGATCCTCTCGGC 293290 Query 39775 GTA--ACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAA 39832 | | || | | | | | |||||||| |||||||| || ||| | || || Sbjct 293291 GAAGGTCTCGGAGC--TGTTGATCCACTTGATGGCCCAATCCGCCTTCCTGGCCACGCAC 293348 Query 39833 GGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTA 39892 |||| || || || || | ||||| || || | || || || | || || Sbjct 293349 GGCACCGTCTCGATGGCGTGGAAGAGGCGGTGCTTGACCTCTGAGTCCTTGATGTAGGTC 293408 Query 39893 TCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAA 39952 || | | ||||| ||||| || || |||||||| || || || ||||| || ||||| Sbjct 293409 TCGAGCAGGAGACTGTACATCTCGGAGTGGATGTTCTCGATTGCGATCTGGAAGCCGTAG 293468 Query 39953 AA 39954 || Sbjct 293469 AA 293470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686768782227480