Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq596 122 7e-23 seq1128 95.1 1e-14 seq1118 95.1 1e-14 seq347 89.7 4e-13 >seq596 Length=631412 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||||| ||| |||| ||| | ||| || || || || || ||||||||| | Sbjct 343401 CCTCCTCTCAACCTCAACACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 343342 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | |||||||||||||||| |||||| | ||||| || || || |||||||| Sbjct 343341 AAAGTCCTACCGTCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGGG 343282 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || |||||| ||||| | | || | ||||| | || || || Sbjct 343281 ATGCCTTCCTTGTCTTGGATCTTTGCTTTCACGTTGTCAATGGTGTCCGAGGACTCCACC 343222 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || ||||| || |||||||| ||||| ||||| Sbjct 343221 TCCAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 343175 >seq1128 Length=278557 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| |||| |||||||| || ||| Sbjct 246327 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCG 246268 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | || || || || ||||||| || Sbjct 246267 GCGAAGATGAGACGCTGCTGGTCCGGAGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTA 246208 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| || || || || || || || | ||||| |||| ||| Sbjct 246207 ACGTTGTCGATGGTGTCGCTGCTCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTC 246148 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 246147 TTCACGAAGATCTGCAT 246131 >seq1118 Length=308725 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || || ||||||||| | |||| | ||||| |||||||| || Sbjct 110898 GTGGATTCTTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCATCTTCAAGCTGTTTGCCT 110957 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || |||| || | |||||| || || || | |||||| || || ||||| ||| Sbjct 110958 GCAAAAATAAGCCTCTGTTGGTCTGGGGGGATACCCTCCTTGTCTTGAATCTTTGCCTTC 111017 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | || || | |||||| |||| ||| || | |||||| || || ||| Sbjct 111018 ACATTATCAATCGTATCAGAACTTTCAACCTCTAAAGTGATTGTTTTGCCAGTGAGGGTT 111077 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||||||||| Sbjct 111078 TTCACAAAGATTTGCAT 111094 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || || || || || ||||| ||||||||||| | |||| | ||||| Sbjct 111114 ACCAAGTGCAAAGTGGATTCCTTTTGGATATTGTAGTCTGCAAGAGTGCGGCCATCTTCA 111173 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||||||||| || |||| | | ||| || || || || | || || || || | Sbjct 111174 AGCTGTTTACCTGCAAAAATCAACCTCTGCTGGTCGGGTGGGATTCCTTCCTTGTCCTGG 111233 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | || | || || | |||||| || | ||| |||| ||| Sbjct 111234 ATCTTGGCCTTGACATTGTCAATGGTATCAGAACTTTCAACCTCCAAAGTGATAGTCTTG 111293 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| |||||||| |||||||| Sbjct 111294 CCGGTAAGAGTCTTCACAAATATTTGCAT 111322 >seq347 Length=438793 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || || || || || || || ||||| ||||||||||| | | | || | ||||| Sbjct 270383 ACTAAGTGCAAAGTGGATTCCTTTTGGATATTGTAGTCCGCAAGGGTACGGCCATCTTCA 270442 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||||||||| || |||| | | ||| || || || || | || || || || | Sbjct 270443 AGCTGTTTACCTGCAAAAATCAACCTCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGG 270502 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | || | || || | ||||||||| | ||| |||| ||| Sbjct 270503 ATCTTGGCCTTGACATTGTCAATGGTATCAGAACTTTCAACTTCCAAAGTGATAGTCTTG 270562 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| ||||||||||||||||| Sbjct 270563 CCAGTAAGAGTCTTCACAAAGATTTGCAT 270591 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || |||||||| || |||||||| | |||| | ||||| |||||||| || Sbjct 270167 GTGGATTCTTTTTGGATGTTGTAGTCAGCAAGAGTGCGGCCATCTTCAAGCTGTTTGCCT 270226 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | ||| || || || || | ||| || || || |||||| || Sbjct 270227 GCAAAGATAAGCCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGGATCTTTGCCTTA 270286 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || || ||||| | |||||| |||| ||| || | ||||| || || ||| Sbjct 270287 ACATTATCAACCGTGTCAGAACTTTCAACCTCTAAAGTGATTGTCTTGCCAGTAAGGGTT 270346 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||||||||| Sbjct 270347 TTCACAAAGATTTGCAT 270363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424849947873384