Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3231 114 2e-20 seq339 104 3e-17 seq306 84.2 3e-11 >seq3231 Length=135437 Score = 114 bits (126), Expect = 2e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || ||||||||||| ||||||||||| ||||| |||| || ||| ||||| | ||| Sbjct 18308 TGAGGTCTTGGTGTTCCAGCATTGAAAAGGGTAGGTGAAGCATGAGTGAACCACCGTTGA 18367 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| | | |||||| | | ||||| ||||| || ||| |||||| || | | Sbjct 18368 GACATCATATGGTATGTTTTGATAACAGAGTCAATATCATCCTTGTGGATTCCAACAGAA 18427 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--T 112118 |||| ||| ||||| | || || | || | | | || | || | || |||| | Sbjct 18428 ACCCTCATTAACATATGTTGAGGTCTCTCTACAACCTTCCCTTGGA--CCTTCAAGAGGT 18485 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 || | ||||||||||||||| ||||||||| || | ||| ||||||| Sbjct 18486 AGGACCTCTCAAGGGTTTTGAAGCCAAAGTAATCATAGTCAAAGTCCCG 18534 >seq339 Length=880584 Score = 104 bits (114), Expect = 3e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | ||| || || || || | | || || |||||| || ||| Sbjct 293136 GCAAAATCGCAGTGCAAACCTTCGTCACGTGACACCAACTCGTTGGAGAAGGTGAGTCCT 293195 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 |||||||||||||||||||||| |||| | || | |||||| ||||||||||||||| Sbjct 293196 GGCATGAGACCCCGCTTCTTCAGCCAAAATATGGAGCAGAAGCTCCCGGAGAAGAAGATC 293255 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818 || ||||| || ||||| || | | | |||||||||| Sbjct 293256 CCTTCCACGCAAGCAAAGGCGACGATCCTCTCGGCGAAGG 293295 >seq306 Length=475288 Score = 84.2 bits (92), Expect = 3e-11 Identities = 192/285 (67%), Gaps = 18/285 (6%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCT-G 11597 ||| |||||||| || || | || ||||| || || || |||||||||||||| || Sbjct 94762 AAATCCATCCATTTCCGTCAACAACTGATTGATAGTCTGCTCTCTCTCATCATTCCCTCC 94703 Query 11598 GCATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | || | ||||| | | ||| | ||||| |||||||| ||||| || || ||||| | Sbjct 94702 TCCTAGC-CCAGCCCCTCTCTGCCTCCCCACGGCATCAATTTCATCGATAAACACAATGC 94644 Query 11658 ATGG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCAC 11712 | || | ||||| ||| | ||||| | ||| | || || || || || Sbjct 94643 AAGGAGCCTTCGATTT-----GGCCTTCTCAAACAAATCCCTCACTCTCGATGCCCCTAC 94589 Query 11713 ACCAACAAACATCTCCACAAAGT---TTGCGGCAGAGCACTGGATGAATGGGACATTTGA 11769 || ||||||| ||||||||| | |||||| || | || || || || | Sbjct 94588 CCCCACAAACAGCTCCACAAACTCCGACGCGGCACAGGA---GAAAAACGGCACCCCGGC 94532 Query 11770 TTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 ||| || || | || || || || |||||||| || |||||||| Sbjct 94531 TTCTCCGGCAACCGCACGTGCTAGAAGGGTCTTCCCGGTACCTGG 94487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627903983527200