Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq339 105 8e-18 seq306 96.9 4e-15 >seq339 Length=880584 Score = 105 bits (116), Expect = 8e-18 Identities = 170/243 (70%), Gaps = 5/243 (2%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| | ||| |||||||| || | | || || |||||| || ||| Sbjct 293136 GCAAAATCGCAGTGCAAACCTTCGTCACGTGACACCAACTCGTTGGAGAAGGTGAGTCCT 293195 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 |||||||||||||||||||||| ||| || || | || || || |||||||||||| Sbjct 293196 GGCATGAGACCCCGCTTCTTCAGCCAAAATATGGAGCAGAAGCTCCCGGAGAAGAAGATC 293255 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG-AGCGGGACTTTGTATCAAA 130194 || ||||| || || || || | || | ||| || |||| ||| || | || Sbjct 293256 CCTTCCACGCAAGCAAAGGCGACGATCCTCTCGGCGAAGGTCTCGGAGCTGTTGAT---- 293311 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 130254 |||||| || ||||| | |||||| | | | ||||| || |||| ||| || | || Sbjct 293312 CCACTTGATGGCCCAATCCGCCTTCCTGGCCACGCACGGCACCGTCTCGATGGCGTGGAA 293371 Query 130255 GAG 130257 ||| Sbjct 293372 GAG 293374 >seq306 Length=475288 Score = 96.9 bits (106), Expect = 4e-15 Identities = 192/282 (68%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| |||||||| || ||||| | |||||||| || || || | ||||||||| | Sbjct 94762 AAATCCATCCATTTCCGTCAACAACTGATTGATAGTCTGCTCTCTCTCATCATTCCCTCC 94703 Query 14212 -CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 14270 | || | || || | | ||| | || ||||| |||||||||||||| || || || | Sbjct 94702 TCCTAGC-CCAGCCCCTCTCTGCCTCCCCACGGCATCAATTTCATCGATAAACACAATGC 94644 Query 14271 ATGG-----TTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGAC 14325 | || | ||||| ||| ||||| | ||| | ||||||| || || || Sbjct 94643 AAGGAGCCTTCGATTT-----GGCCTTCTCAAACAAATCCCTCACTCTCGATGCCCCTAC 94589 Query 14326 ACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTC 14385 |||||||||| ||||||||| | | |||| ||| || || || || | ||| Sbjct 94588 CCCCACAAACAGCTCCACAAACTCCGACGCGGCACAGGAGAAAAACGGCACCCCGGCTTC 94529 Query 14386 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || || | || || || || ||||||||||| || ||||| Sbjct 94528 TCCGGCAACCGCACGTGCTAGAAGGGTCTTCCCGGTACCTGG 94487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618309139714920