Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq339 131 2e-25 seq182 127 2e-24 seq306 104 3e-17 seq3231 95.1 1e-14 >seq339 Length=880584 Score = 131 bits (144), Expect = 2e-25 Identities = 176/243 (72%), Gaps = 3/243 (1%) Strand=Plus/Minus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 ||||| | |||||| | || || ||||| | | ||| ||||||||||| || ||| Sbjct 293374 CTCTTCCACGCCATCGAGACGGTGCCGTGCGTGGCCAGGAAGGCGGATTGGGCCATCAAG 293315 Query 94774 TGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAG 94833 ||| | | || || | |||| || ||| | || |||| ||||| || || || Sbjct 293314 TGGATCAA--CAGCTCCGAGA-CCTTCGCCGAGAGGATCGTCGCCTTTGCTTGCGTGGAA 293258 Query 94834 GGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATG 94893 || ||||||||||| || ||||||| | || | |||||| |||||||| ||||||||| Sbjct 293257 GGGATCTTCTTCTCCGGGAGCTTCTGCTCCATATTTTGGCTGAAGAAGCGGGGTCTCATG 293198 Query 94894 CCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTT 94953 ||||| ||| ||||||||||||| | | || |||||||| || | ||| || ||| Sbjct 293197 CCAGGACTCACCTTCTCCAACGAGTTGGTGTCACGTGACGAAGGTTTGCACTGCGATTTT 293138 Query 94954 GCG 94956 ||| Sbjct 293137 GCG 293135 >seq182 Length=789423 Score = 127 bits (140), Expect = 2e-24 Identities = 282/420 (67%), Gaps = 20/420 (5%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || ||| | | || || || || || |||| |||||| || | | |||||| Sbjct 233571 TCAAGAATGTCAGCCCTGTTAGTTGCTGCAATAACAATAATACCAGTATTACCCTCAAAA 233630 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 |||||||| ||||||| ||| ||||||| || ||||| | ||||||||| || | Sbjct 233631 CCATCCATTTCTGTCAGAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCT---CCA 233687 Query 9677 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 ||| |||| | | ||| ||| || |||||||| ||||| | || || || || Sbjct 233688 CCAATTCCAGTTCCTCTTTGTCGTCCGACAGCATCAATTTCATCCACAAATACAATACAA 233747 Query 9734 GGTTGATTTTC-GCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 || ||| || | | ||| ||| ||||| || || | ||| || ||||| || Sbjct 233748 GGAGCATTCTCTTTGGCCTTCTTGAAA-AGATCACGGACTCTAGAGGCACCAACACCCAC 233806 Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTGGATG------AAGGGGACATTAGATTC 9846 |||||| || ||||| | |||||| | |||| || || ||| || ||| Sbjct 233807 AAACATTTCAACAAACT------CGGAACCTGAGATGGAGAAAAATGGAACACCAGCTTC 233860 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9906 ||| ||||| ||| ||| ||||||||||| || || || || || | || || | Sbjct 233861 ACCAGCAATTGCTTTGGCTAGAAGAGTCTTCCCAGTTCCCGGAGGGCCAACAAGAAGAAC 233920 Query 9907 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 |||| |||||| ||| ||| | || | | | |||||| | ||| | ||| ||||| Sbjct 233921 ACCTTTTGGAATGCGGGCTCCAATAGCAGTGAACCGCTCAGGCTTCTTCAAAAACTCCAC 233980 >seq306 Length=475288 Score = 104 bits (114), Expect = 3e-17 Identities = 255/382 (67%), Gaps = 11/382 (3%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| |||||||| || ||||| | || || ||||| || || | ||||||||| || Sbjct 94762 AAATCCATCCATTTCCGTCAACAACTGATTGATAGTCTGCTCTCTCTCATCATTCCCTCC 94703 Query 9673 -CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | || | ||||| | | ||| | |||||||||||||| ||||| || || || |||| Sbjct 94702 TCCTAGC-CCAGCCCCTCTCTGCCTCCCCACGGCATCAATTTCATCGATAAACACAATGC 94644 Query 9732 ATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 9787 | || || ||| || | ||||| | ||||| || | | || || || Sbjct 94643 AAGGAGCCTTCGATTTGGCCTTC----TCAAACAAATCCCTCACTCTCGATGCCCCTACC 94588 Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9847 || ||||||| ||||||||| | | |||| ||| || || || || | ||| Sbjct 94587 CCCACAAACAGCTCCACAAACTCCGACGCGGCACAGGAGAAAAACGGCACCCCGGCTTCT 94528 Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9907 || |||| || || || ||||| ||||| || |||||||| |||| | | || Sbjct 94527 CCGGCAACCGCACGTGCTAGAAGGGTCTTCCCGGTACCTGGGGGACCCACTAACAGACAC 94468 Query 9908 CCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACA 9967 ||| ||| ||||| || || | | ||| | ||||| | || | |||||| ||| Sbjct 94467 CCTTTTGGGATCTTAGCTCCTAATGCGGTGTACTTATCAGGGTTTTTCAAAAAATCAACA 94408 Query 9968 ATTTCTTCCAATT-CATCTTTG 9988 | ||| | ||||| || ||||| Sbjct 94407 ACTTCCTGCAATTCCAGCTTTG 94386 >seq3231 Length=135437 Score = 95.1 bits (104), Expect = 1e-14 Identities = 172/246 (70%), Gaps = 7/246 (3%) Strand=Plus/Minus Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACGGC 104198 |||| |||| || ||| ||||| ||||||||||||||| | ||| |||| || | | Sbjct 18531 GACTTTGACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCCTACCTCTTGAAGGTC 18472 Query 104199 TCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTC 104258 | | || ||| | || | || || | ||||| ||| | || | | || || | Sbjct 18471 -CAAGGGAAGGTTG-TAGAGAGACCTCAACATATGTTAATGAGGGTTTCTGTTGGAATCC 18414 Query 104259 ATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCA 104318 | ||| || ||||| ||||| | | |||||| | | |||||| ||| | ||||| Sbjct 18413 ACAAGGATGATATTGACTCTGTTATCAAAACATACCATATGATGTCTCAACGGTGGTTCA 18354 Query 104319 TTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA--ATGTCCAGT-T 104375 ||| || |||| ||||| ||||||||||| ||||||||||| ||| |||| ||| | Sbjct 18353 CTCATGCTTCACCTACCCTTTTCAATGCTGGAACACCAAGACCTCAAGTATGTTTAGTGT 18294 Query 104376 GCTTCC 104381 ||||| Sbjct 18293 ACTTCC 18288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583141909576680