Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq339 118 1e-21 >seq339 Length=880584 Score = 118 bits (130), Expect = 1e-21 Identities = 591/917 (64%), Gaps = 42/917 (5%) Strand=Plus/Minus Query 59530 TTCTCGCGCCGAGCACCGCGCGTTTCACAACCTTTCCTATACGGTACCCGGATCTGTGGG 59589 ||||||| || | | | | |||||| | || || || | ||||||||| | |||| Sbjct 293736 TTCTCGCCCCAAACCCGGACCGTTTCTGCATGTTCCCCATCCAGTACCCGGAAATCTGGG 293677 Query 59590 CCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCC--GG 59647 |||| ||||| || | || |||||| ||| ||||||| | || ||| || || Sbjct 293676 AGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGGTCGATCTCTCCCAGG 293617 Query 59648 AGACCTGAAGGATTGGGACAAGCTCAATTAC-GACGAGCAGCATTTCATCAAGATGGTCC 59706 | ||| | | ||||| | || || | |||||| || |||||| ||| Sbjct 293616 ACACCCGCC--ACTGGGA-AGCCTTAACCCCCGACGAGACCCACTTCATCTCTCACATCC 293560 Query 59707 TGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCC- 59765 | ||||||||||| || || || || || | || || | | | | | |||| Sbjct 293559 TCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCC--GGCCGTTTCAT 293502 Query 59766 -AAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAA-CGAG 59822 | || ||||| | ||||||||||| | ||||||| | ||| ||| ||| |||| Sbjct 293501 GACCGAGATCCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCG--CAATCGAG 293444 Query 59823 TCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAG 59882 ||||||||||||| |||| ||| || |||| | | ||||||| | || | Sbjct 293443 AACATCCACTCCGAGATGTACAGTCTCCTGCTCGAGACCTACATCAAGGACTCAGAGGTC 293384 Query 59883 AAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATG 59941 ||| | || |||| ||||| |||||| | || || || || || || || Sbjct 293383 AAGCACCGCCTCTTCCACGCCATCGAGACGGTGCCGTGC-GTGGCCAGGAAGGCGGATTG 293325 Query 59942 GGCCATGCAGTGGATGAG----TCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTG 59997 |||||| ||||||| | ||| || | || || | | || | || |||| Sbjct 293324 GGCCATCAAGTGGATCAACAGCTCCGAGACCTTC----GCCGAGAGGATCGTCGCCTTTG 293269 Query 59998 CATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGC 60057 | ||||||||||| ||||||||||| || ||||| | || || ||||| || |||| Sbjct 293268 CTTGCGTGGAAGGGATCTTCTTCTCCGGGAGCTTCTGCTCCATATTTTGGCTGAAGAAGC 293209 Query 60058 GTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCC 60117 | || |||||||| || || | |||||||||||| || | || || ||||| || | | Sbjct 293208 GGGGTCTCATGCCAGGACTCACCTTCTCCAACGAGTTGGTGTCACGTGACGAAGGTTTGC 293149 Query 60118 ATCAGGAGTTTGCAGTGACGCTCTATTCACACCTATTG-GAAAAATGCCCTTCCAAG-GA 60175 | || ||||| ||| | | ||| | | | | ||| | | | || | | | | Sbjct 293148 ACTGCGATTTTGC-GTGCCT-TATATACTCTC-TGTTGAGGAGCAAGCTGAGCGAGGAGC 293092 Query 60176 TATTCACAAG-ATTGTTCAGTGGGCTTGTGAAG-TGGAGAGCGAGTTCATCACAGAAGCG 60233 | | | || || || ||| ||| || | || || ||||| || || ||| Sbjct 293091 GCGTGAGGGGTATAGTGAAGGAGGCG-GTGGAGATTGAAAGGGAGTTTGTCTGTGACGCG 293033 Query 60234 CTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTC 60293 || || | | | || ||| | | ||| | |||||||| ||||||| Sbjct 293032 CTGCCGGTCGCTTTAGTTGGGATGAATTGTACGTTGATGGCCCAGTACATCGAGTTTGTT 292973 Query 60294 GCGGACCGCCTCATGGCCCAGTTTGG-----AGAAGGACCAATTTACGGCGTGAATAACC 60348 ||||| | || ||| ||| || |||||| | ||||| |||| || | Sbjct 292972 GCGGATAGGCTGTTGGTTGCGTTAGGGTACGAGAAGG-----TGTACGGTGTGACAAATC 292918 Query 60349 CTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGG 60408 | || || ||||||||| |||||| ||| |||||||||||||||||||||||||| ||| Sbjct 292917 CGTTTGATTGGATGGAGCTCATCTCCTTGCAAGGGAAGACCAACTTCTTTGAGAAGAGGG 292858 Query 60409 TCGGGGATTATTCAAAG 60425 | || || ||| |||| Sbjct 292857 TTGGAGAATATCAAAAG 292841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548412990076080