Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq339 109 6e-19 seq6904 86.0 7e-12 seq126 86.0 7e-12 >seq339 Length=880584 Score = 109 bits (120), Expect = 6e-19 Identities = 476/734 (65%), Gaps = 28/734 (4%) Strand=Plus/Plus Query 74456 CTTTGAATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTT 74515 |||| ||| || || |||| ||| ||||| |||||||||||||||| ||| |||||| Sbjct 292841 CTTTTGATATTCTCCAACCCTCTTCTCAAAGAAGTTGGTCTTCCCTTGCAAGGAGATGAG 292900 Query 74516 CTCCATCCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC---CCCAAACTGTGC 74572 ||||||||| || || || || | ||||||| | |||||| ||| ||| | Sbjct 292901 CTCCATCCAATCAAACGGATTTGTCACACCGTACA---CCTTCTCGTACCCTAACGCAAC 292957 Query 74573 CATGAGGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGAT 74632 || || | |||||| ||||| | |||||||| | ||| || ||| || | Sbjct 292958 CAACAGCCTATCCGCAACAAACTCGATGTACTGGGCCATCAACGTACAATTCATCCCAAC 293017 Query 74633 GAGTTTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGAC 74692 | | |||||| || || || |||||| || || | ||| ||| | || Sbjct 293018 TAAAGCGACCGGCAGCGCGTCACAGACAAACTCCCTTTCAATCTCCACCGCCTCCTTCAC 293077 Query 74693 AATCTTGTGAATGTCTTTGGAAGGGCA-CTTTTCCCTCAGGTGAGAGTA-AAGCGTCACG 74750 || | | | | | || ||| ||||| ||||||| | | ||| Sbjct 293078 TATACCCCTCACG-CGCTCCTCGCTCAGCTTGCTCCTCAACAGAGAGTATATAAGGCAC- 293135 Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810 ||||| || ||| | ||||| || | | ||| || || || || | || || Sbjct 293136 GCAAAATCGCAGTGCAAACCTTCGTCACGTGACACCAACTCGTTGGAGAAGGTGAGTCCT 293195 Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870 ||||| || || |||||||||| |||||| |||| |||||| || ||||||||| Sbjct 293196 GGCATGAGACCCCGCTTCTTCAGCCAAAATATGGAGCAGAAGCTCCCGGAGAAGAAGATC 293255 Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGA---AGTCATC 74927 ||||| || || ||||||||||| | | | ||||| ||| ||||| | ||| Sbjct 293256 CCTTCCACGCAAGCAAAGGCGACGATCCTCTCGGCGAA-GGT--CTCGGAGCTGTTGATC 293312 Query 74928 CAAGTCTGAGCCCATTCAGCTTTTCGTTTGAC-CGCA-GGGACAGTATCGATCGCTTGGA 74985 || | ||||| || || || | | | | |||| || || || ||||| || |||| Sbjct 293313 CACTTGATGGCCCAATCCGCCTTCC--TGGCCACGCACGGCACCGTCTCGATGGCGTGGA 293370 Query 74986 AGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCT 75045 |||||| ||| | || | ||||||| | | || | || || |||| ||| Sbjct 293371 AGAGGCGGTGCTTGACCTCTGAGTCCTTGATGTAGGTCTCGAGCAGGAGACTGTACATCT 293430 Query 75046 CCGAATGAATCGACTCG-TTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAAT 75103 | || || || |||| ||| ||| |||| | ||||||| | || ||||| || | Sbjct 293431 CGGAGTGGATGTTCTCGATTG--CGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCGAC 293488 Query 75104 CTGTACATCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCG 75161 ||| | || | ||||| | | ||| ||||| | |||||||||||| |||||| Sbjct 293489 CTGGATCTCGGTCATGAAACGGCC--GGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCG 293546 Query 75162 GCGAAAAAAGCCAG 75175 ||||| || || || Sbjct 293547 GCGAAGAAGGCGAG 293560 >seq6904 Length=51221 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 41617 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 41676 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 41677 TGAGCTACGAGAGC 41690 >seq126 Length=843774 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 682770 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 682711 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 682710 TGAGCTATGAAAGC 682697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547104456858600