Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1118 136 2e-27 seq596 125 4e-24 seq347 122 5e-23 seq4739 109 3e-19 seq181 107 1e-18 >seq1118 Length=308725 Score = 136 bits (150), Expect = 2e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || || || | ||||| ||||| ||| ||||||||||||||||||||| | | Sbjct 111324 CCACCCCTGAGTCGTAGGACCAAGTGGAGGGTGGACTCCTTTTGAATGTTATAATCAGCA 111383 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||||||||||||||| || || || | | |||||||| || || Sbjct 111384 AGAGTGCGGCCATCTTCAAGTTGTTTACCAGCGAAGATCAGCCTTTGTTGGTCTGGAGGG 111443 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||| || | || || | ||| ||||| |||||| || Sbjct 111444 ATGCCTTCCTTGTCCTGGATC-TTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAAC 111502 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | ||||| ||||| || || | ||||||||||||||||||||| Sbjct 111503 CTCGAGAGTTATGGTTTTGCCAGTGAGGGTTTTCACAAAAATCTGCATG 111551 Score = 105 bits (116), Expect = 4e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| ||||| |||||| || || |||||||||| ||| || ||| | || || || || Sbjct 110663 ATGCAGAGTAGACTCCTTCTGGATATTATAATCTGCAAGAGTACGCCCATCCTCCAGCTG 110722 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || || ||||| || || | ||| ||||| || || | || |||||||| ||||| Sbjct 110723 CTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATCTT 110782 Query 34623 TTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | | ||||| || ||| ||||| ||||| || || | || || ||||| || | Sbjct 110783 T-GACTTAACATTATCAATGGTGTCCGAACTCTCAACCTCAAGAGTGATAGTTTTTCCAG 110841 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 | || ||||| |||||||||||||| Sbjct 110842 TCAAAGTTTTAACAAAAATCTGCAT 110866 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || ||||| | ||||| || || ||| |||||||| |||||||| || | Sbjct 111780 CCACCCCTGAGACGGAGAACCAAGTGAAGTGTGGATTCCTTTTGGATGTTATAGTCAGCC 111839 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || ||||| |||||||| ||||| || | | || ||||| || || Sbjct 111840 AGAGTGCGTCCATCCTCAAGCTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGTGGG 111899 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || || | ||| ||||| ||| || || Sbjct 111900 ATCCCCTCCTTGTCCTGGATC-TTGGCCTTGACATTGTCAATGGTGTCAGAGCTTTCGAC 111958 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || || || | ||||| ||||| |||||||| Sbjct 111959 CTCAAGGGTGATGGTCTTTCCAGTGAGAGTTTTTACAAAGATCTGCAT 112006 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| | || || ||| || || || ||||| || || | ||| || || Sbjct 110877 AGACGGAGCACGAGGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGGCAAGAGTGCGG 110936 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | |||||||| ||||| || ||||| || | | ||||||||| || || | |||||| Sbjct 110937 CCATCTTCAAGCTGTTTGCCTGCAAAAATAAGCCTCTGTTGGTCTGGGGGGATACCCTCC 110996 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| |||| || || || ||| || || || || || || | || Sbjct 110997 TTGTCT-TGAATCTTTGCCTTCACATTATCAATCGTATCAGAACTTTCAACCTCTAAAGT 111055 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || ||||| || || | ||||||||||| || |||||| Sbjct 111056 GATTGTTTTGCCAGTGAGGGTTTTCACAAAGATTTGCATG 111095 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || | ||| | ||||| || || ||| |||||| || |||||||| || | Sbjct 111551 GCCACCCCTTAAACGGAGAACCAAGTGCAGTGTGGACTCCTTCTGGATGTTATAGTCAGC 111610 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | ||||||||||| ||||| || || || | | || ||||| || || Sbjct 111611 AAGAGTGCGGCCATCTTCAAGTTGCTTACCAGCGAAGATCAGCCTTTGCTGGTCTGGTGG 111670 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | || || | || ||||| ||| || | Sbjct 111671 GATCCCCTCCTTGTCCTGGATC-TTGGCCTTCACATTGTCGATGGTGTCAGAGCTTTCAA 111729 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || || || || || || | ||||| ||||| |||||||| Sbjct 111730 CCTCAAGCGTGATGGTCTTGCCAGTGAGAGTTTTTACAAAGATCTGCAT 111778 >seq596 Length=631412 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | |||||||| |||||| || |||||| || ||||| || || | Sbjct 343401 CCTCCTCTCAACCTCAACACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 343342 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || | ||||||| || ||||| ||||| || || | || || ||||||||||| Sbjct 343341 AAAGTCCTACCGTCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGGG 343282 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| |||| |||| ||| ||| | ||| ||||| | |||||| Sbjct 343281 ATGCCTTCCTTGTCTTGGATC-TTTGCTTTCACGTTGTCAATGGTGTCCGAGGACTCCAC 343223 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| ||||| || || |||| |||||||| || |||||||| Sbjct 343222 CTCCAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 343175 >seq347 Length=438793 Score = 122 bits (134), Expect = 5e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || || |||| ||||| ||||| ||| ||||||||| ||||||||||| | | Sbjct 270593 CCACCCCTGAGCCGCAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCA 270652 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||||||||| |||||||| || || || | || ||||| || || Sbjct 270653 AGAGTGCGGCCGTCTTCAAGTTGCTTACCGGCGAAGATCAACCTTTGCTGGTCTGGAGGG 270712 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||| || | || || | || ||||| |||||| || Sbjct 270713 ATGCCTTCCTTGTCCTGGATC-TTGGCCTTGACATTGTCGATGGTGTCAGAGCTCTCAAC 270771 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | || || ||||| || || | ||||| ||||| ||||||||| Sbjct 270772 CTCGAGAGTGATGGTTTTGCCAGTGAGGGTTTTTACAAAGATCTGCATG 270820 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| ||||| |||||| ||||| |||||||||| ||| || ||| | || || || || Sbjct 269932 ATGCAGAGTAGACTCCTTCTGAATATTATAATCTGCAAGAGTGCGCCCATCCTCCAGCTG 269991 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || || ||||| || || | ||| || || | || | || |||||||| ||||| Sbjct 269992 CTTCCCTGCAAAGATCAACCTCTGCTGATCTAGTGGAATCCCTTCCTTGTCCTGAATCTT 270051 Query 34623 TTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | ||||| | ||| ||||| ||||| || || | ||| || ||||| || || Sbjct 270052 TGCTTTTACATTTTCAATGGTGTCCGAACTCTCAACCTCAAGGGTGATGGTTTTTCCAGT 270111 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 || ||||| |||||||||||||| Sbjct 270112 CAAAGTTTTGACAAAAATCTGCAT 270135 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || ||| || ||||| ||||| || || | ||| || || Sbjct 270146 AGACGGAGCACCAGGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGCAAGAGTGCGG 270205 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | |||||||| ||||| || ||||| || | | ||| ||||| || || | || ||| Sbjct 270206 CCATCTTCAAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTGGTCTGGAGGGATACCTTCC 270265 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||||||| | ||||| || || ||||| || || || || | || Sbjct 270266 TTGTCTTGGATCTTT-GCCTTAACATTATCAACCGTGTCAGAACTTTCAACCTCTAAAGT 270324 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | ||||||||||| || |||||| Sbjct 270325 GATTGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCATG 270364 >seq4739 Length=93234 Score = 109 bits (120), Expect = 3e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || || ||||| || || || |||||| |||||||||||||| | ||| | || Sbjct 55227 AGGCGAAAAACCAAGTGAAGTGTTGACTCCTTCTGAATGTTATAATCAGCAAGAATACGA 55168 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || |||| |||||| || | | ||| |||||||| || | |||||| Sbjct 55167 CCATCTTCGAGCTGCTTACTGGCAAAGATAAGCCTCTGCTGGTCCGGTGGGATACCCTCC 55108 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || |||| |||| || || | ||| || || ||||| || |||| || Sbjct 55107 TTATCCTGGATC-TTTGCCTTCACATTGTCAATAGTTTCAGAACTCTCAACATCCAAAGT 55049 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||||||| || | ||||||||||| |||||||| Sbjct 55048 GATGGTTTTACCAGTAAGGGTTTTCACAAAGATCTGCAT 55010 >seq181 Length=541317 Score = 107 bits (118), Expect = 1e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 ||||||| | || || | ||| | ||||| || |||||| || ||||| || || | Sbjct 240882 CGCCGCCGCGGAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGG 240823 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || || || |||||||||||||||| || || || || | || |||||||| || | Sbjct 240822 CGAGAGTCCGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATGAGGCGTTGTTGGTCTGGTG 240763 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | || ||||||||| ||| ||||| || ||| | || || ||| | || Sbjct 240762 GGATGCCTTCCTTGTCTTGGAT-TTTTGCCTTCACGTTGTCGATGGTATCTGAGGATTCG 240704 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || | ||||||||| || || |||| |||||||| || ||||||||| Sbjct 240703 ACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATG 240653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314667050147531