Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq596 125 6e-24 seq181 116 3e-21 seq347 114 1e-20 seq1118 111 1e-19 seq1128 104 2e-17 >seq596 Length=631412 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | || || || || ||||| | || Sbjct 343175 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTGGAGGTGGAGTCCTCG 343234 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| ||| || |||||||| |||||||| || || || || Sbjct 343235 GACACCATTGACAACGTGAAAGCAAAGATCCAAGACAAGGAAGGCATCCCGCCGGACCAG 343294 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | |||||| ||||| | |||||| || ||| | |||| |||||| Sbjct 343295 CAACGCCTCATCTTCGCCGGAAAACAGCTCGAAGACGGTAGGACTTTGGCCGACTACAAC 343354 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||||||||| | ||| |||| ||| | ||| | || || Sbjct 343355 ATCCAGAAGGAGTCGACGCTCCATCTGGTGTTGAGGTTGAGAGGAGG 343401 >seq181 Length=541317 Score = 116 bits (128), Expect = 3e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| || || ||||| || || || ||| | || || || || || ||| | | Sbjct 240652 CCATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTCGAATCCT 240711 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | || | || || | || || |||||| |||||||| |||||||| ||||| || | Sbjct 240712 CAGATACCATCGACAACGTGAAGGCAAAAATCCAAGACAAGGAAGGCATCCCACCAGACC 240771 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 |||| || | || | ||| || |||||| | |||||| | ||| | |||| |||| Sbjct 240772 AACAACGCCTCATCTTCGCTGGAAAACAACTTGAAGACGGCCGGACTCTCGCCGACTACA 240831 Query 27166 ACATTCAAAAGGAGTCGAC 27184 |||| || ||||||||||| Sbjct 240832 ACATCCAGAAGGAGTCGAC 240850 >seq347 Length=438793 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||||||||| || || ||||| | || ||||| || || || || Sbjct 270820 CATGCAGATCTTTGTAAAAACCCTCACTGGCAAAACCATCACTCTCGAGGTTGAGAGCTC 270761 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| || || || ||||| |||||||| || || || || Sbjct 270760 TGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCAGACCA 270701 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || | || || | |||||| || ||| | |||||| | || || | ||||| || Sbjct 270700 GCAAAGGTTGATCTTCGCCGGTAAGCAACTTGAAGACGGCCGCACTCTTGCTGATTATAA 270641 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||||||||| ||| | || ||||| |||| | ||||||| || Sbjct 270640 CATCCAAAAGGAGTCCACCCTCCACTTGGTCCTGCGGCTCAGGGGTGGAAT 270590 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||||||||| || |||||| | || || ||||| || ||| || Sbjct 271047 ATGCAGATCTTTGTAAAAACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAAAGCTCT 270988 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | |||| | ||||| || || || || || || || || ||||| ||||| Sbjct 270987 GACACAGTTGACAATGTCAAGGCCAAGATCCAGGATAAGGAGGGGATCCCACCAGATCAG 270928 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || || ||||| | || || | || || | || || ||| Sbjct 270927 CAAAGGCTTATCTTTGCTGGTAAACAGCTTGAGGATGGCCGCACTCTTGCTGACTATAAC 270868 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || |||||| | ||| | |||||||||| Sbjct 270867 ATCCAGAAGGAGTCCACACTCCACTTGGTTCTCCGTCTCAGGGGTGGCAT 270818 >seq1118 Length=308725 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| ||||| || || ||||| | || ||||| || || || || Sbjct 111551 CATGCAGATTTTTGTGAAAACCCTCACTGGCAAAACCATAACTCTCGAGGTTGAGAGCTC 111492 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | ||||| || || || ||||| |||||||| || || || || Sbjct 111491 TGACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCAGACCA 111432 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||| || |||||| | ||||| | || || | ||||| || Sbjct 111431 ACAAAGGCTGATCTTCGCTGGTAAACAACTTGAAGATGGCCGCACTCTTGCTGATTATAA 111372 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||||||| ||| | || ||||| | || | ||||||| || Sbjct 111371 CATTCAAAAGGAGTCCACCCTCCACTTGGTCCTACGACTCAGGGGTGGAAT 111321 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||||||||| || |||||| | || || ||||| || ||| || Sbjct 111778 ATGCAGATCTTTGTAAAAACTCTCACTGGCAAGACCATCACGCTTGAGGTTGAAAGCTCT 111719 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| || || || ||||| || || Sbjct 111718 GACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATCCCACCAGACCAG 111659 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||| || || ||| | ||||| | || || | || || ||| Sbjct 111658 CAAAGGCTGATCTTCGCTGGTAAGCAACTTGAAGATGGCCGCACTCTTGCTGACTATAAC 111599 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || |||||| | ||||| |||||||||| Sbjct 111598 ATCCAGAAGGAGTCCACACTGCACTTGGTTCTCCGTTTAAGGGGTGGCAT 111549 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| ||||| || || ||||| | || ||| | || || ||| || Sbjct 111095 CATGCAAATCTTTGTGAAAACCCTCACTGGCAAAACAATCACTTTAGAGGTTGAAAGTTC 111036 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || ||||||| | || || ||| ||||||||||| || || || || || || || Sbjct 111035 TGATACGATTGATAATGTGAAGGCAAAGATTCAAGACAAGGAGGGTATCCCCCCAGACCA 110976 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||| | | || | || |||||||| | ||||| | || || |||| ||||| Sbjct 110975 ACAGAGGCTTATTTTTGCAGGCAAACAGCTTGAAGATGGCCGCACTCTTGCCGACTACAA 110916 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || || || ||| | || | || | ||| | || ||||| || Sbjct 110915 CATCCAGAAAGAATCCACCCTTCACCTCGTGCTCCGTCTCCGCGGTGGTAT 110865 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||||||||| || || ||| | || || ||||| || ||| || Sbjct 112006 ATGCAGATCTTTGTAAAAACTCTCACTGGAAAGACCATCACCCTTGAGGTCGAAAGCTCT 111947 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || || ||||| || || || ||||| || || Sbjct 111946 GACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCACCAGACCAG 111887 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || || ||||| | || || | || | | || || ||| Sbjct 111886 CAAAGGCTGATCTTTGCTGGTAAACAGCTTGAGGATGGACGCACTCTGGCTGACTATAAC 111827 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || | || |||||| | ||| | ||||||| || Sbjct 111826 ATCCAAAAGGAATCCACACTTCACTTGGTTCTCCGTCTCAGGGGTGGGAT 111777 >seq1128 Length=278557 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || || || || || |||||| | || || | || ||||| | || Sbjct 246815 ATGCAGATATTCGTGAAGACCCTCACAGGCAAGACCATCACCTTGGAGGTGGAGTCCTCG 246874 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || ||||| ||||| ||||| || || || || || Sbjct 246875 GACACCATCGATAACGTGAAGGCGAAGATTCAGGACAAGGAAGGGATCCCTCCGGACCAG 246934 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || || ||||| || | |||| || | ||||||||| Sbjct 246935 CAGAGGTTGATCTTTGCTGGGAAGCAGTTGGAGGATGGAAGGACCCTTGCTGATTACAAC 246994 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| ||| | || | || ||||| | || ||||| Sbjct 246995 ATTCAGAAGGAGTCTACCCTTCACCTTGTCCTGCGTCTCCGTGGTGG 247041 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| ||||||||||| | || || || || ||||| | Sbjct 246131 ATGCAGATCTTCGTGAAGACTTTGACCGGCAAGACCATCACCCTCGAGGTGGAGAGCAGC 246190 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| ||||| || || || || || Sbjct 246191 GACACCATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCGGACCAG 246250 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || | || ||| | ||| | |||| |||||| Sbjct 246251 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAAC 246310 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || | || | ||| | || || ||||| Sbjct 246311 ATCCAGAAGGAGTCCACACTCCACCTCGTCCTCCGTCTCCGTGGCGGCAT 246360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434829747320640