Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq1633 109 7e-19 seq6120 93.3 5e-14 seq402 86.0 8e-12 >seq1633 Length=412253 Score = 109 bits (120), Expect = 7e-19 Identities = 245/367 (67%), Gaps = 6/367 (2%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGC---TGCAGCAT 176203 ||||| | | ||||||||||| | ||||| || | | | ||||| | | | || Sbjct 238513 TTTACATCGAATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACTGCAACTTCTGTAT 238454 Query 176204 GTTTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAG 176263 | ||||||||| | ||||| | || | | ||||| ||||||||||| ||||| | Sbjct 238453 TTATTATCGTTG---TCATTGCTACTCCTTCAATAGATATTGACGGTATTCGTGAACCTG 238397 Query 176264 TAGCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAA 176323 | | | |||||| | |||||||||| || || || || || | | || | || Sbjct 238396 TTTCCAGGTCTCTATTTTATGGAAACAGTATTATTTCTGGTGCCATTATTCCTACTTCTG 238337 Query 176324 ACGCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCT 176383 || || || | | ||| ||||| | || ||||| || | |||| |||||| | | Sbjct 238336 TAGCTATAGGTTTGCGCTTTTACCCGAGATGAGAAGCGGCGTCCGTTGCTGAATGGTTAT 238277 Query 176384 ACAATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACA 176443 ||||||| | || ||| | || |||| | || || | | || | | ||||| Sbjct 238276 ACAATGGCAGTCCTTACGAGCTAATTGTTCTACATTTGTTACTTGGCGTAGCTTGTTACA 238217 Query 176444 TGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCAT 176503 |||| || | ||||||||||||| | | | || ||||| |||||||| |||||||| Sbjct 238216 TGGGCCGTAAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCAT 238157 Query 176504 ACTCTGC 176510 | || || Sbjct 238156 ATTCAGC 238150 >seq6120 Length=94228 Score = 93.3 bits (102), Expect = 5e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 177032 GTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACC 177091 |||| ||||||||||||||||||||||| || ||||||||||| |||||||| || |||| Sbjct 53900 GTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACC 53959 Query 177092 TTGCTGCTG 177100 | ||||||| Sbjct 53960 TAGCTGCTG 53968 >seq402 Length=581868 Score = 86.0 bits (94), Expect = 8e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 177001 GTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCAC 177060 || ||| |||||||| ||||| ||||| ||| ||||| ||||||| ||||||||| Sbjct 365474 GTAATTAATACATGGGCTGATATTATTAACTTTGCTAACCTGGGTATGGTAGTTATGCAT 365415 Query 177061 GAGCGTAATGCTCACAACTTCCCACTTGAC 177090 || ||||||||||| |||||||| || ||| Sbjct 365414 GAACGTAATGCTCATAACTTCCCTCTAGAC 365385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603371385210240