Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq347 87.8 1e-12 >seq347 Length=438793 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| |||||||| ||||||||||| || ||| || | || || ||||| | Sbjct 270592 AATGCAAATCTTTGTGAAGACTCTTACTGGCAAGACTATCACTTTGGAAGTTGAAAGTTC 270533 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || ||||| ||||| || || ||||| ||||| | || || Sbjct 270532 TGATACCATTGACAAT--GTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCCGAC 270475 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| |||||||| || ||||| | || || | || | | | | || ||| Sbjct 270474 CAGCAGAGGTTGATTTTTGCAGGTAAACAGCTTGAAGATGGCCGTACCCTTGCGGACTAC 270415 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 || |||||||| || ||||||||| || ||| | ||| || | || ||| Sbjct 270414 AATATCCAAAAGGAATCCACTTTGCACTTAGTTCTTCGTCTGAGGGGGGGC 270364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355791675350589