Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1118 116 3e-21 seq347 116 3e-21 >seq1118 Length=308725 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||||||||| || ||||| || |||||||| ||||| | | Sbjct 111550 ATGCAGATTTTTGTGAAAACCCTCACTGGCAAAACCATAACTCTCGAGGTTGAGAGCTCT 111491 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || || ||||| ||||| | || ||||| || Sbjct 111490 GACACCATTGACAATGTCAAGGC-CAAGATCCAGGACAAGGAAGGCATCCCTCCAGACCA 111432 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || || || |||||||| ||||| | |||||| | | ||||| || Sbjct 111431 ACAAAGGCTGATCTTCGCTGGTAAACAACTTGAAGATGGCCGCACTCTTGCTGATTATAA 111372 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| |||||||| Sbjct 111371 CATTCAAAAGGAGTCCAC 111354 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||||||||| || ||||| |||||| | || ||||| | Sbjct 111094 ATGCAAATCTTTGTGAAAACCCTCACTGGCAAAACAATCACTTTAGAGGTTGAAAGTTCT 111035 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | ||| ||| ||||| || ||| | || ||||| || Sbjct 111034 GATACGATTGATAATGTGAAGGC-AAAGATTCAAGACAAGGAGGGTATCCCCCCAGACCA 110976 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || ||||| |||||||| || ||||| | |||||| | | ||| ||||| Sbjct 110975 ACAGAGGCTTATTTTTGCAGGCAAACAGCTTGAAGATGGCCGCACTCTTGCCGACTACAA 110916 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| ||||| Sbjct 110915 CATCCAGAAAGAATCCAC 110898 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| |||||||| | || |||||||| |||||||| || ||||| || Sbjct 110866 ATGCAGATTTTTGTTAAAACTTTGACTGGAAAAACTATCACTCTTGAGGTTGAGAGTTCG 110807 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | ||| ||| ||||| ||||| | || ||||| || Sbjct 110806 GACACCATTGATAATGTTAAGTC-AAAGATTCAGGACAAGGAAGGGATCCCACCAGACCA 110748 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || || || ||||| || | || ||| | | ||||| || Sbjct 110747 GCAGAGGTTGATCTTTGCGGGGAAGCAGCTGGAGGATGGGCGTACTCTTGCAGATTATAA 110688 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || ||||| || | ||| | ||| Sbjct 110687 TATCCAGAAGGAGTCTACTCTGCATCTTGTT 110657 >seq347 Length=438793 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || ||||| ||||||||||| ||||| | | Sbjct 270819 ATGCAGATCTTTGTAAAAACCCTCACTGGCAAAACCATCACTCTCGAGGTTGAGAGCTCT 270760 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| ||||| | || ||||| || Sbjct 270759 GACACCATCGACAATGTCAAGGC-CAAGATCCAGGACAAGGAAGGCATCCCTCCAGACCA 270701 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | || || || ||||| || ||||| ||||||| |||||| | | ||||| || Sbjct 270700 GCAAAGGTTGATCTTCGCCGGTAAGCAACTTGAAGACGGCCGCACTCTTGCTGATTATAA 270641 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| |||||||| Sbjct 270640 CATCCAAAAGGAGTCCAC 270623 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| | || |||||||| ||||| || || ||||| || Sbjct 270135 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAAACCATCACCCTTGAGGTTGAGAGTTCG 270076 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| ||||| ||| ||| ||||| ||||| | || | |||||| Sbjct 270075 GACACCATTGAAAATGTAAAAGCAAAGATTCAGGACAAGGAAGGGATTCCACTAGATCAG 270016 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| || || || ||||| || | |||||| | | ||||| || Sbjct 270015 CAGAGGTTGATCTTTGCAGGGAAGCAGCTGGAGGATGGGCGCACTCTTGCAGATTATAAT 269956 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || ||||| || | ||| | ||| Sbjct 269955 ATTCAGAAGGAGTCTACTCTGCATCTTGTT 269926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337942423443956