Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3231 111 2e-19 seq339 89.7 7e-13 >seq3231 Length=135437 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | ||| || | ||| | || | || ||| |||| ||| || Sbjct 17993 CCTCCTTGATCCACATAACGGGCAGTATCATTGAACACCCGCAGCATCGGAACAATGCCA 18052 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||| || |||||||||||| ||||||||| ||| | || ||||| ||| || ||| Sbjct 18053 TTAGAAGTCCCATTTGTTCCACGAATATAACTACCAGTGGCACGAATGTTATGAACAGAT 18112 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || || | ||| || ||||| ||||| || ||| Sbjct 18113 ACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCTTTCAGAGTATCATATATA 18172 Query 78339 CCCTCTATACTGTCATCCATCATG 78362 || || ||||||||||| ||||| Sbjct 18173 CCTTCAATACTGTCATCTTTCATG 18196 >seq339 Length=880584 Score = 89.7 bits (98), Expect = 7e-13 Identities = 227/340 (67%), Gaps = 4/340 (1%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || |||||||| || || | |||||| || | | || ||||| || || ||||| Sbjct 293133 CACGCAAAATCGCAGTGCAAACCTTCGTCACGTGACACCAACTCGTTGGAGAAGGTGAGT 293192 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 || ||||| || || || || || |||||||||| || || ||| | || || ||||| Sbjct 293193 CCTGGCATGAGACCCCGCTTCTTCAGCCAAAATA-TGGAGCAGAAGCTCCCGGAGAAGAA 293251 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTAT 48319 || ||||| ||| ||||| ||| | ||||| || | | | | ||| || Sbjct 293252 GATCCCTTCCACGCAAGCAAAGGCGACGATCCTCTCGGCGAAGGTCTCGGAGCTGTTGAT 293311 Query 48320 CCAC-CGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 48378 |||| | || |||||||| |||||| | || || |||| || || || || | | Sbjct 293312 CCACTTGATG-GCCCAATCCGCCTTCCTGGCCACGCACGGCACCGTCTCGATGGCGTGGA 293370 Query 48379 AGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTT 48438 |||| || || | | || || | ||| || || | | ||||| ||||| | Sbjct 293371 AGAGGCGGTGCTTGACCTCTGAGTCCTTGATGTAGGTCTCGAGCAGGAGACTGTACATCT 293430 Query 48439 CGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAA 48478 ||||||| || || || ||||| ||||| || ||||| || Sbjct 293431 CGGAGTGGATGTTCTCGATTGCGATCTGGAAGCCGTAGAA 293470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694527200448480