Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3231 129 8e-25 >seq3231 Length=135437 Score = 129 bits (142), Expect = 8e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | |||||| | ||| | || | || ||| |||| |||||| Sbjct 17993 CCTCCTTGATCCACATAACGGGCAGTATCATTGAACACCCGCAGCATCGGAACAATGCCA 18052 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||| || |||||||||||| ||||||||| ||| |||||||| ||| || |||| Sbjct 18053 TTAGAAGTCCCATTTGTTCCACGAATATAACTACCAGTGGCACGAATGTTATGAACAGAT 18112 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| ||| | |||||| ||||| || ||||| || Sbjct 18113 ACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCTTTCAGAGTATCATATATA 18172 Query 76934 CCCTCTATACTATCATCCATCATG 76957 || || ||||| ||||| ||||| Sbjct 18173 CCTTCAATACTGTCATCTTTCATG 18196 Score = 93.3 bits (102), Expect = 6e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| ||||| || | ||||| || |||||||||||||| || ||| | | || | Sbjct 18320 GTTCCAGCATTGAAAAGGGTAGGTGAAGCATGAGTGAACCACCGTTGAGACATCATATGG 18379 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||||| ||||| | || ||||| | ||| || ||||| |||| || | ||| || Sbjct 18380 TATGTTTTGATAACAGAGTCAATATCATCCTTG-TGGATTCCAACAGAAACCCTCATTAA 18438 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 |||||| ||||||| |||||| ||| | | ||||| | ||| || | || | Sbjct 18439 CATATGTTGAGGTCTCTCTACAACCTTCCCTTGGACCTTCAAGAGGTAGGACCTCTCAAG 18498 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| || ||||| || | || |||||| | || || ||||| Sbjct 18499 GGTTTTGAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATAGATAAT 18546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712789077234240