Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq2265 426 2e-114 seq6543 82.4 9e-11 seq2257 82.4 9e-11 >seq2265 Length=185284 Score = 426 bits (472), Expect = 2e-114 Identities = 595/833 (71%), Gaps = 1/833 (0%) Strand=Plus/Plus Query 186141 ACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 186200 || || ||||| || |||||| || | | | | |||||| | | |||| |||||| Sbjct 94232 ACCGCCGCAGTTTCTACTCCTACTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGT 94291 Query 186201 CCTGAGTCTCAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTG 186260 ||||| | ||||||||| | | || |||| ||| | || || || |||| |||||| Sbjct 94292 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 94351 Query 186261 GCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCGT 186320 || || ||||| | || | || |||||||||||||| || || |||||| | ||| Sbjct 94352 GCTCTACACGGCACTTTCGGACTAATAGGTTTCATGCTACGTCAATTTGAACTTGCTCGA 94411 Query 186321 CTCGTAGGTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTT 186380 | || || || || || ||||| || | || |||| ||| || || || |||||| Sbjct 94412 TTTGTTCA-ATTCGACCTTATAATGCAATCACATTCTCTGTTCCAATTGCAGTTTTTGTT 94470 Query 186381 AGTGTATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGA 186440 ||||||||| || || || || || ||||| |||||||| || || ||||| Sbjct 94471 TCTGTATTCCTGATTTATCCACTGGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 94530 Query 186441 GTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAAT 186500 || ||||| || ||| ||||| | | || ||||||| || || || ||||| |||||| Sbjct 94531 GTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAT 94590 Query 186501 CCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCAT 186560 ||||| || || ||||| || | ||| | | || | |||||| || | || || ||| Sbjct 94591 CCATTTCATATAATGGGAGTTGACGGTGTATTGGGCGCTGCTCTTCTATGCGCTATTCAT 94650 Query 186561 GGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCA 186620 |||| |||||| ||||||||| | | ||||||||| || ||||| |||||| | || Sbjct 94651 GGTGCTACTGTGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCTATGCT 94710 Query 186621 TTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCA 186680 || | | || |||| ||||||| ||||| ||||||||||| ||| | || ||||| Sbjct 94711 TTTAACCCAACTCAAGCTAAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCC 94770 Query 186681 CAGATCTTCGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTT 186740 || || || || ||||| ||| |||||| |||||| | |||||||| ||| | ||||| Sbjct 94771 CAAATATTTGGGATTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTA 94830 Query 186741 CCTGTTATGGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGT 186800 || || | ||| | |||| | | || | | ||||| ||||| ||||| ||| Sbjct 94831 CCAGTAACCGGTTTATGGATGAGCGCTCTCGGAGTAGTCGGTCTGGCTCTGAACCTACGT 94890 Query 186801 GCTTATGACTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTC 186860 || |||||||| || |||||| | | ||||| | ||||| || || ||||| ||| Sbjct 94891 GCCTATGACTTCGTTTCTCAGGAAATTCGTGCAGCGAAAGATCCCGAATTTGAGACTTTC 94950 Query 186861 TATACCAAGAATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAA 186920 || ||||| ||||| ||||| || |||||| | ||| | |||||||| | ||||| Sbjct 94951 TACACCAAAAATATTCTATTAAACGAAGGTATTCGTCCTTGGATGGCGACTCAAGATCAG 95010 Query 186921 CCACATGAAAACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 || ||||||||| || |||| ||||| || || |||| | || |||||||| Sbjct 95011 CCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTGCCCCGTGGAAACGCTCT 95063 >seq6543 Length=70685 Score = 82.4 bits (90), Expect = 9e-11 Identities = 133/190 (70%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 171005 TCTT-GATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGTGCTT 171063 |||| ||||| ||||| | || ||| | || || |||||| || || ||||| |||| Sbjct 60142 TCTTAGATGCAGCTGAGAATGCTGGAATCGAGCTGCCCTATTCTTGCCGAGCTGGGGCTT 60201 Query 171064 GTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCTTTCC 171123 | || |||||||| || || || | ||| | || || || || ||| || |||| Sbjct 60202 GCTCCACCTGTGCCGGTAAGATGGTATCAGGTACAGTGGACCAGTCTGATGGTTCCTTCC 60261 Query 171124 TTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCATATCCTACAAGTG 171183 |||||||| |||| || || |||| | | ||||| || || ||||| || || | Sbjct 60262 TTGATGATAATCAAATGAAAGAGGGTTACCTGCTGACTTGTGTTTCATACCCAACTTCAG 60321 Query 171184 ATTGTGTAAT 171193 ||||||| || Sbjct 60322 ATTGTGTGAT 60331 >seq2257 Length=219887 Score = 82.4 bits (90), Expect = 9e-11 Identities = 133/190 (70%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 171005 TCTT-GATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGTGCTT 171063 |||| ||||| ||||| | || ||| | || || |||||| || || ||||| |||| Sbjct 145923 TCTTAGATGCAGCTGAGAATGCTGGAATCGAGCTGCCCTATTCTTGCCGAGCTGGGGCTT 145864 Query 171064 GTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCTTTCC 171123 | || |||||||| || || || | ||| | || || || || ||| || |||| Sbjct 145863 GCTCCACCTGTGCCGGTAAGATGGTATCAGGTACAGTGGACCAGTCTGATGGTTCCTTCC 145804 Query 171124 TTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCATATCCTACAAGTG 171183 |||||||| |||| || || |||| | | ||||| || || ||||| || || | Sbjct 145803 TTGATGATAATCAAATGAAAGAGGGTTACCTGCTGACTTGTGTTTCATACCCAACTTCAG 145744 Query 171184 ATTGTGTAAT 171193 ||||||| || Sbjct 145743 ATTGTGTGAT 145734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621943598724840