Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq2265 473 1e-128 seq1633 138 1e-27 seq6680 95.1 1e-14 seq6543 82.4 9e-11 seq2257 82.4 9e-11 >seq2265 Length=185284 Score = 473 bits (524), Expect = 1e-128 Identities = 608/837 (73%), Gaps = 1/837 (0%) Strand=Plus/Plus Query 165333 ACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGT 165392 || || |||||||||||||| | | | | | |||||| | || | ||||||||| Sbjct 94232 ACCGCCGCAGTTTCTACTCCTACTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGT 94291 Query 165393 CCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTG 165452 ||||| | ||||| || || | || ||||| ||| | || || || ||||||||||| Sbjct 94292 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 94351 Query 165453 GCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA 165512 || || ||||| | || | ||| |||||||||||||| || || |||||||| || ||| Sbjct 94352 GCTCTACACGGCACTTTCGGACTAATAGGTTTCATGCTACGTCAATTTGAACTTGCTCGA 94411 Query 165513 CTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTT 165572 || | ||||| ||||| ||||| || | ||||||| ||| ||||| || || ||| Sbjct 94412 TTTGTTCA-ATTCGACCTTATAATGCAATCACATTCTCTGTTCCAATTGCAGTTTTTGTT 94470 Query 165573 AGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGG 165632 ||| || || || ||||| ||||| || || |||||||| || || || || Sbjct 94471 TCTGTATTCCTGATTTATCCACTGGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 94530 Query 165633 GTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAAT 165692 || ||||| || || |||||| | ||||| |||||||||| ||||| ||||| ||||| Sbjct 94531 GTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAT 94590 Query 165693 CCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCAT 165752 || ||||| || ||||| || | ||| | || |||| || | || | || |||||| Sbjct 94591 CCATTTCATATAATGGGAGTTGACGGTGTATTGGGCGCTGCTCTTCTATGCGCTATTCAT 94650 Query 165753 GGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCA 165812 |||| ||| || || |||||||| | |||||||||||| ||||| || ||| | || Sbjct 94651 GGTGCTACTGTGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCTATGCT 94710 Query 165813 TTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCT 165872 ||| | ||||| | | ||||||||||| ||||||||||||||||| || ||||| Sbjct 94711 TTTAACCCAACTCAAGCTAAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCC 94770 Query 165873 CAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTT 165932 || || ||||| |||||||| |||||| |||||| | || ||||||||| | ||||| Sbjct 94771 CAAATATTTGGGATTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTA 94830 Query 165933 CCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGT 165992 || || | || | |||| || || | || | | ||||| || || || || ||| Sbjct 94831 CCAGTAACCGGTTTATGGATGAGCGCTCTCGGAGTAGTCGGTCTGGCTCTGAACCTACGT 94890 Query 165993 GCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTC 166052 || ||||| || || |||||||| ||| | || || | ||||| || ||||| || ||| Sbjct 94891 GCCTATGACTTCGTTTCTCAGGAAATTCGTGCAGCGAAAGATCCCGAATTTGAGACTTTC 94950 Query 166053 TATACGAAAAACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAA 166112 || || ||||| || || | || ||||| | ||| | ||| |||| || ||| || Sbjct 94951 TACACCAAAAATATTCTATTAAACGAAGGTATTCGTCCTTGGATGGCGACTCAAGATCAG 95010 Query 166113 CCTCATGAGAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 |||||||| ||| || | |||||||| || || |||| | || ||||| |||||| Sbjct 95011 CCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTGCCCCGTGGAAACGCTCTTTAA 95067 >seq1633 Length=412253 Score = 138 bits (152), Expect = 1e-27 Identities = 278/404 (69%), Gaps = 9/404 (2%) Strand=Plus/Minus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 ||||| ||||| |||| || || || | | | || ||| ||||| || || || Sbjct 238546 TTCTG-AACTGTATAACCAGCACTGAAAACCATCTTTACATCGAATGGTTTGGTGTTTTG 238488 Query 163988 ATGATTCCCTGCCTGCTGG-CAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTC 164045 ||||| |||| | | | | | || ||| | ||| || || |||| |||| | | ||| Sbjct 238487 ATGAT-CCCTACTTTATTGACTGCAACTTC-TGTATTTATTATCGTTGTCATTGCTACTC 238430 Query 164046 CTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 164105 || | | || || || || || || ||||| || | | || || | |||||||||| Sbjct 238429 CTTCAATAGATATTGACGGTATTCGTGAACCTGTTTCCAGGTCTCTATTTTATGGAAACA 238370 Query 164106 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 164165 || || |||||||| |||| ||| ||||| ||||| ||| ||| ||| ||||| | Sbjct 238369 GTATTATTTCTGGTGCCATTATTCCTACTTCTGTAGCTATAGGTTTGCGCTTTTACCCGA 238310 Query 164166 TCTGGGAAGCAGCAAGTCTG--GACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGT 164223 || ||||| || ||| | | |||||| | ||||| || |||||| | | || | Sbjct 238309 GATGAGAAGCGGC--GTCCGTTGCTGAATGGTTATACAATGGCAGTCCTTACGAGCTAAT 238252 Query 164224 TGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTA 164283 ||| | || || | ||||| | | ||||||||| ||| ||||||||||| || Sbjct 238251 TGTTCTACATTTGTTACTTGGCGTAGCTTGTTACATGGGCCGTAAGTGGGAACTTAGTTT 238192 Query 164284 CCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTC 164327 |||| | |||||||| ||||||||| || ||||| || |||| Sbjct 238191 CCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 238148 >seq6680 Length=52110 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 165765 GAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACT 165824 |||| || ||| | |||||||||||| ||||| || ||| || ||| | ||| Sbjct 10923 GAGATTATTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACT 10864 Query 165825 CAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGT 165884 || | || ||||||||||| |||||||||||||||| || ||| | || || ||||| Sbjct 10863 CAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCACTTTTGGCCGCAAATCTTTGGG 10804 Query 165885 ATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGT 165931 || |||| ||||| | |||| | | ||||||||| | ||||| Sbjct 10803 GTTTATTTCTTCAATATTCATTGGTTACGTTTCTTTATGTTATTTGT 10757 >seq6543 Length=70685 Score = 82.4 bits (90), Expect = 9e-11 Identities = 153/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 161555 TACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGTCGTGCAGGC 161614 ||||| | || ||||||||| | || || | || | ||| || || || || || Sbjct 60138 TACATCTTAGATGCAGCTGAGAATGCTGGAATCGAGCTGCCCTATTCTTGCCGAGCTGGG 60197 Query 161615 GCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 161674 ||||| || | || || || || | || || || || || ||||| || ||| Sbjct 60198 GCTTGCTCCACCTGTGCCGGTAAGATGGTATCAGGTACAGTGGACCAGTCTGATGGTTCC 60257 Query 161675 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCCACG 161734 ||||| || ||| | ||||| | |||| | | |||||||||||||| || || || Sbjct 60258 TTCCTTGATGATAATCAAATGAAAGAGGGTTACCTGCTGACTTGTGTTTCATACCCAACT 60317 Query 161735 AGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACTGTATTGA 161779 |||||||||||| | ||| | || |||| ||||| |||||| Sbjct 60318 TCAGATTGTGTGATTCACACTCACAAGGAAGGTGAACTTTATTGA 60362 >seq2257 Length=219887 Score = 82.4 bits (90), Expect = 9e-11 Identities = 153/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 161555 TACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGTCGTGCAGGC 161614 ||||| | || ||||||||| | || || | || | ||| || || || || || Sbjct 145927 TACATCTTAGATGCAGCTGAGAATGCTGGAATCGAGCTGCCCTATTCTTGCCGAGCTGGG 145868 Query 161615 GCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 161674 ||||| || | || || || || | || || || || || ||||| || ||| Sbjct 145867 GCTTGCTCCACCTGTGCCGGTAAGATGGTATCAGGTACAGTGGACCAGTCTGATGGTTCC 145808 Query 161675 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCCACG 161734 ||||| || ||| | ||||| | |||| | | |||||||||||||| || || || Sbjct 145807 TTCCTTGATGATAATCAAATGAAAGAGGGTTACCTGCTGACTTGTGTTTCATACCCAACT 145748 Query 161735 AGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACTGTATTGA 161779 |||||||||||| | ||| | || |||| ||||| |||||| Sbjct 145747 TCAGATTGTGTGATTCACACTCACAAGGAAGGTGAACTTTATTGA 145703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557540729121240